Ppla018978.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020190.1:10883462-10900112[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.8e-05 0.011 18.5 0.7 1 23 173 195 173 195 0.95 2 15 0.00049 0.095 15.6 0.6 3 23 203 223 202 223 0.99 3 15 0.00039 0.075 15.9 0.2 1 23 330 352 330 352 0.98 4 15 0.065 13 8.9 0.1 1 23 358 381 358 381 0.96 5 15 2.7e-07 5.3e-05 25.8 2.7 1 23 406 428 406 428 0.98 6 15 0.024 4.6 10.3 0.0 1 23 441 463 441 463 0.94 7 15 0.89 1.7e+02 5.3 0.5 1 23 469 492 469 492 0.95 8 15 0.072 14 8.7 1.7 2 19 499 516 499 517 0.96 9 15 0.00092 0.18 14.7 4.7 3 23 528 548 526 548 0.98 10 15 0.0086 1.7 11.6 0.3 2 23 554 575 553 575 0.97 11 15 1.9e-05 0.0036 20.0 0.4 1 23 583 605 583 605 0.98 12 15 0.0081 1.6 11.7 0.2 3 23 613 633 611 633 0.97 13 15 0.00026 0.05 16.5 0.3 1 23 639 661 639 662 0.95 14 15 0.29 56 6.8 1.2 1 23 676 698 676 698 0.96 15 15 0.00023 0.045 16.6 0.0 1 20 1094 1113 1094 1116 0.94
Sequence Information
- Coding Sequence
- ATGGAAGAACCATCATTTACTCTGACCTGGGAGGACGCCACCACTGTCGTCCAAACAGAAGAGGTCATATCTACTATGGAAAACGAAATAATTCCGGCACAGTCTGAGGAATTCATTGGTGAAGTGCAGCCTGAAGAGTACTCTGAGAATGTGCAAACTGAGGATTTGGTTGAGCATGTGGGTGTGGTGGAAGAAGAGGTGGTTCAGGATAATTCCCAAACTGAACAAGAGGTGACTCTGGAAGAAACTCAGGCAGCTGATGATGGTAGTGTTGTGTACTTAGAAGATGGCAACGTTTTGGTTATGCATGAAGATAATCCAGAATCATATTCACAGGATCAATTAATGGAAGTTACAGAAGAAGTGATAACTGATACTGATCAGTGGGGTGCTAGTTGCCAGGAGGAAATAATAGTTGCTGCAGAGGAAGCTGTTGGACCCCTGGAAGGGCAACAGGTTGAAGATGAAGACATACCGCTACCGACGGACCAAGATGAATATACTGCCGCAAGACCATATCCATGCGATTTTTGTAGTAGAAGGTTTAGaaaaaaagcaaatttaatGAATCACATGGTCGCCCATCAAACAGACCGTCCCCATGGATGTAATTTGTGCGGAGTAAGGTACATGAGAAAATCCGATTTGATGAACCACCTTAAAAGTCACGCCTATATTCCAGAATCTGAGCAACCAGAAGatgAGGAACATCCTGTTTATGAACACAGCTTCGATAAGCCTCGAAAGAAGGTAAGAGCTTATggcaagaaaaagaaaaagaaagttaCTGTAAAAGAAGAATATGAAACTGTGTATACAACTGCTGAaacagCTTCCAGTTCGCAGTATAACTTCCAAGAACCTGGCGACGTGAAGTTGATGGATAGCGAAATCGACAACAGCCAGTACATCACTACCGAAACAACGCAAGAAGAAGAGGTGGAGGAACATGAGTCCAAGTATCCCATTACCGACCCTAAAAAGCCCTTTGTGTGTCAGCACTGCGGAGTCGGATTCGCGAGAGAAAAAGCATTGGCGTCCCACTCGAGGATACACGGTGGCGATAGTCCTTTTGAGTGCCAGAAATGTGGCGAGATGTTTTGGGATATTGCTCTTATGCAGGAACATGCGAGAACTAAACATGGAGAAATGGAAGATTTTGACgacgatgaagatgaagattACTCCGATTCGGAAGAAACAAAGTACGGAACGTACTATTGCCCGACATGCGGACTTTCATTTCATAGACAAGATAACTTACGGAGGCATCAAAGGATACATATTAAAGAGGAGTACGTCACCGAGCAGGAATTTGGACATATTTGTAACGTGTGCGGAGAATCTTTTCAGGAGGCGCTTGATCTACTCGCTCATGCAGAAGTCCACGCACGCGGTTCGGATCATCGTTGCATGATTTGTGGAGAAATGTGCCTCGATGAAAATGCATTGGCCACGCACGTTCAAAGTATCCACACCAATTTGCCACCGAATACGTGTGCCTTGTGTGGTCGCACGTGCAAAGACAGCAGGACATTATTGAAGCATTCTTGGGAACATTCAAAGGAAAAATTATTTGGTTGTACGAAGTGCTCCAAGACTTTCCACAATAAGGCGCGTTTGAAGCGCCACATGCTTTCTCACAGaaacaaagtTGTGACGTGCGACGTATGCGGAGAGGACTTCCCAGATGGAAGGAGTTTAATGAATCACAGACACAGTCACAGCAGCGTATCTGGCAGGCAGTTTCCTTGCCGAGAATGTGGAAAAACGTTTGGATCTAGGAGTTCACAGCAGATTCATATTCGCATCCATACAGgtgAAAGGCCGTACGGTTGCCGATTTTGCTGGAAAGCCTTTGCAGACGGTGGAACTTTAAGAAAACACGAACGAATTCATACTGGTGAAAAACCCTATGCTTGTGCGGTCTGTCCTAGAGCATTCAATCAGAGGGTTGTTCTTAGAGAACATATTCGGTCGCATCATTCGGGCCCAGATCCCAAATATTCCCACAGTATGACACCCTATTGTTGCGCAGTATGTTCAGATATGTTTGCTACGTCACAAGATTTGATTTTGCACCTGATCCATCATTGCGACATGAACACTGCTATGAAGAGGCAGCCGCAAGTTGGTCCTAGAAAATATAAAAGGAGAAGAAAACTTAAACCACACGAATTAGATTTACTGTCCGCCACTAATCAGGTAGAAGAGGAGAGTTATGCCATGGAAGAGCAGCAAGTGGATGACGAGGAATATGCCCAGGCCGAATCGGAGGAGGAACGAGAGACTAGAAGAAGGTCTAGGCGGACGTCTTCACGGAAGGGGTCTGGTTCATCACCTAAAACcagCATAAGTGAATCAATTTCTGAGATATACAATAGTTTGAACACCATAGAAAACAACGATTCCCTCCTGCTGCCCAAATCGCCTACCTCAAAAGCGAAGCTGACTAAAAAAGCCAAGAACGACGCCGCGTCTCTTCCTTCAAGACCAAAAATGATACATACGCAAAAGACGAGAGTTCCCGTCGACACCGGGGACGATGGCCGAGTTAGACACAGAACTAAAACTATGGTTACAAGAACGCAGCCCGCAGAGATCAAGTCGGCTACAGGTGAAAGAATACGGCCCagaacaaaaaatgttaactaccATGTTCTAAATCCAGAGAAGCTCCCCATAGCTACTTTCCCATCCAATGACCAAACTCAAGAAGCCGTTGAAAATCTCTTAAAGGAGTCTGCGGAAGTGTCAGCAAATGGGACTATGTTGACAGAAGAGATTGTGGAGCATGCTCCTGATGTAGCAGCGGAGCAGACCGTGGAGACAGAGATTCCAGTACCTGTCGGGATTGTGGAAGTCAGAACAAGACGGAATAGCACTAGGAGTACCAGAAATGTTATAGGGCCAGGCAGCAAAGTTAGACTAGTCAAAGAAGGAATGATCGTCTCCAAAGTTAAAAGAAACAGTGAAAGTCAAAATGAACCAGAGTCCATTTTGCCGGATCCTCAGTCTGAACAGATTTACATTAAAGAGGAACGTCTCGGTTTTAATACTACCAACAATTATCAATCAGAAACGGGTCTAGCGGAAGCAGCCACCATtgaatcaaaacaaattttcttgACGCAACAACACGCGGACAATGCTGGTCCCGTTCAGACTTCCTATTCAAATCCGAACGTAATCAATATTAAACAGGAACTGCTGGATCCGACCGCCCTACACGAGTTGGCTGAAATTTCGATGCGACACGCCAATAACACTACGAACCTGTTCAAGTGCGAGATGTGCGACGAGGTCTTTTCCGATAGGGCGCAGCTGCTGGTACATGTACCCATCCATATTTGA
- Protein Sequence
- MEEPSFTLTWEDATTVVQTEEVISTMENEIIPAQSEEFIGEVQPEEYSENVQTEDLVEHVGVVEEEVVQDNSQTEQEVTLEETQAADDGSVVYLEDGNVLVMHEDNPESYSQDQLMEVTEEVITDTDQWGASCQEEIIVAAEEAVGPLEGQQVEDEDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYMRKSDLMNHLKSHAYIPESEQPEDEEHPVYEHSFDKPRKKVRAYGKKKKKKVTVKEEYETVYTTAETASSSQYNFQEPGDVKLMDSEIDNSQYITTETTQEEEVEEHESKYPITDPKKPFVCQHCGVGFAREKALASHSRIHGGDSPFECQKCGEMFWDIALMQEHARTKHGEMEDFDDDEDEDYSDSEETKYGTYYCPTCGLSFHRQDNLRRHQRIHIKEEYVTEQEFGHICNVCGESFQEALDLLAHAEVHARGSDHRCMICGEMCLDENALATHVQSIHTNLPPNTCALCGRTCKDSRTLLKHSWEHSKEKLFGCTKCSKTFHNKARLKRHMLSHRNKVVTCDVCGEDFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSHSMTPYCCAVCSDMFATSQDLILHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELDLLSATNQVEEESYAMEEQQVDDEEYAQAESEEERETRRRSRRTSSRKGSGSSPKTSISESISEIYNSLNTIENNDSLLLPKSPTSKAKLTKKAKNDAASLPSRPKMIHTQKTRVPVDTGDDGRVRHRTKTMVTRTQPAEIKSATGERIRPRTKNVNYHVLNPEKLPIATFPSNDQTQEAVENLLKESAEVSANGTMLTEEIVEHAPDVAAEQTVETEIPVPVGIVEVRTRRNSTRSTRNVIGPGSKVRLVKEGMIVSKVKRNSESQNEPESILPDPQSEQIYIKEERLGFNTTNNYQSETGLAEAATIESKQIFLTQQHADNAGPVQTSYSNPNVINIKQELLDPTALHELAEISMRHANNTTNLFKCEMCDEVFSDRAQLLVHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444395; iTF_01239385; iTF_01244449; iTF_00196575;
- 90% Identity
- -
- 80% Identity
- -