Basic Information

Insect: Polydrusus cervinus
Gene Symbol: -
Assembly: GCA_935413225.1
Location: CAKXYS010000397.1:246088-271607[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8e-05 0.0082 17.8 0.5 1 23 171 193 171 193 0.95

2 15 0.00042 0.043 15.6 0.6 3 23 201 221 200 221 0.99

3 15 0.00016 0.016 16.9 1.6 1 23 329 351 329 351 0.98

4 15 0.056 5.7 8.9 0.1 1 23 357 380 357 380 0.96

5 15 2.3e-07 2.4e-05 25.8 2.7 1 23 405 427 405 427 0.98

6 15 0.02 2.1 10.3 0.0 1 23 440 462 440 462 0.94

7 15 0.023 2.3 10.1 0.1 1 23 468 491 468 491 0.94

8 15 0.031 3.2 9.7 2.6 1 19 497 515 497 516 0.96

9 15 0.00079 0.081 14.7 4.7 3 23 527 547 525 547 0.98

10 15 0.01 1 11.2 0.3 2 23 553 574 552 574 0.96

11 15 1.6e-05 0.0016 20.0 0.4 1 23 582 604 582 604 0.98

12 15 0.0069 0.71 11.7 0.2 3 23 612 632 610 632 0.97

13 15 0.00022 0.023 16.4 0.3 1 23 638 660 638 661 0.95

14 15 0.3 30 6.6 0.7 1 23 675 697 675 697 0.96

15 15 0.0002 0.02 16.6 0.0 1 20 1100 1119 1100 1122 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8e-05	0.0082	17.8	0.5	1	23	171	193	171	193	0.95
2	15	0.00042	0.043	15.6	0.6	3	23	201	221	200	221	0.99
3	15	0.00016	0.016	16.9	1.6	1	23	329	351	329	351	0.98
4	15	0.056	5.7	8.9	0.1	1	23	357	380	357	380	0.96
5	15	2.3e-07	2.4e-05	25.8	2.7	1	23	405	427	405	427	0.98
6	15	0.02	2.1	10.3	0.0	1	23	440	462	440	462	0.94
7	15	0.023	2.3	10.1	0.1	1	23	468	491	468	491	0.94
8	15	0.031	3.2	9.7	2.6	1	19	497	515	497	516	0.96
9	15	0.00079	0.081	14.7	4.7	3	23	527	547	525	547	0.98
10	15	0.01	1	11.2	0.3	2	23	553	574	552	574	0.96
11	15	1.6e-05	0.0016	20.0	0.4	1	23	582	604	582	604	0.98
12	15	0.0069	0.71	11.7	0.2	3	23	612	632	610	632	0.97
13	15	0.00022	0.023	16.4	0.3	1	23	638	660	638	661	0.95
14	15	0.3	30	6.6	0.7	1	23	675	697	675	697	0.96
15	15	0.0002	0.02	16.6	0.0	1	20	1100	1119	1100	1122	0.94

Sequence Information

Coding Sequence: ATGGAAGAATCATCTTTCACTTTGACCTGGGAGGACGCCACAACTGTCGTCCAAACCGAGGAGGTCATATCCACAATGGAAAATGAAATAATCCCTGCTCAATCTGAGGAATTCATTGGTGAAGTGCAGGCCGAAGAGTACCCGGACAATGTGGAACCTGAAGATTTGGTTGAGCATGTGGGAGTGGTAGAGGAAGAGGTGGTCCAAGATAACTCCCAAGCTGAACAAGAAATAACTCTTGAAGATTCTCAAGCAGCAGATGACGGCAGTGTTATGTATTTGACAGatgacAATGTTTTGGTAATGCACGATGGTAATTCAGGAAACTACTCACAAGAACAGTTAATGGAAGTCACAGAAGAGGTCATTACTGACCAATGGGGAGAAAGTTGTCCAGAAGAAATAATAGTTGGTTCAGAGGAGGCTGTTGGGGCCATGGAGGGGCAACCAGTCGGCGATGAGGACATACCTCTACCAACAGACCAGGATGAATACACTGCAGCAAGACCATATCCCTGTGATTTTTGCAGCAGAAGGTTTAGAAAAAAGGCCAATTTAGTGAATCATATGGTGGCCCATCAAACAGACCGTCCGCATGGATGTAATTTGTGTGGAGTAAGGTATATGAGGAAATCAGATTTGATGAATCATCTCAAAAGTCATGCTTATATTCCTGAATCAGATGCCATGGAAGatgaGGAACACCCTCTTTACGAACACAGCTTTGATAAACCGCGAAAGAAGCCGAAAGGCTATgccaagaaaaagaagaagaaaactgTTGTAAAGGAAGAATATGAGAACATGTTTACAACGGCAGAAAcagCCCCTTCTAGTTCTCGATTCAACTTCCAAGAGCCAACCGACGTGAAGTTATTAGATGGTGAAATCGATAACACCGATTACCTCACTACTACAACATCGACTCAAGAAATGGAAGAAGAAGTGGACATCAAGTACCCAGCAACGGACCCCAAAAAGCCTTTTGTATGTCAGCACTGTGGGGTTTGCTTCGCAAGGGAAAAAGCACTGGCTTCTCATTCGAGAGTGCATGGGGGTGATAGCCCCTTCGAGTGCCAGAAGTGCGGGGAGATGTTTTGGGATATTGCTCTTATGCAGGAACATGCAAGAACCAAGCACGGTGAACTAGAGGACTTTGACGATGATGAAGATGAAGACTACTCAGACTCGGAGGAGACAAAATACGGGACGTACTATTGTCCTACTTGCGGACTGTCTTTTCATAGACAAGACAATTTAAGAAGACACCAGAGGATACACATAAAAGAAGAGTATGTCAACGAACATGAGTTTGGACATATTTGTAATGTTTGTGGAGAATCTTTtcagGAGGCCCTTGATCTTCTCGCTCACGCTGAAGTCCACGCACGTGGATCGGAATATCGATGCATGATTTGTGGGGAAATTTGCCCCGACGAAAACTTATTGGCCACACACGTTCAAGGTATCCACACAAACTTGCCCCCGCATACCTGTGCCTTGTGTGGACGCACGTGCAAAGACAGCAGAACTTTATTAAAGCATTCTTGGGAACATTCTAAGgaaAAATCGTTTGGTTGTACAAAATGCTCCAAGACCTTTCATAATAAGGCGCGTCTTAAGCGTCACATGCTTTCTCACAGaaataaagtgGTATCCTGTGATGTATGCGGCGAGGATTTTCCAGATGGCAGAAGTTTAATGAACCACAGACACAGCCACAGTAGCGTATCTGGTAGGCAGTTTCCCTGCCGTGAATGTGGAAAAACTTTTGGGTCGAGAAGTTCACAGCAAATTCATATTCGTATACATACAGgtgAACGGCCATATGGTTGTCGGTTTTGCTGGAAAGCGTTTGCAGATGGCGGAACTCTAAGAAAGCATGAACGGATTCATACTGGTGAAAAACCGTACGCTTGCGCAGTATGTCCCAGAGCTTTTAATCAGCGAGTTGTTCTAAGGGAGCACATTCGGTCACATCATTCTGGCCCAGATCCAAAATATTCGCATAGTATGACGCCTTATTGCTGCGCGGTATGTTCGGACATGTTTGCCACTGCGCAAGACTTGATTTTGCACTTGATACATCATTGCGACATGAACACTGCTATGAAGAGACAACCTCAAGTCGGTccaagaaaatataaaagaaggaGAAAACTTAAACCACATGAATTAGACCTTATATCTGCTACGAACCAAGTGGAAGAGGATAGTTATGCGATGGACGAGCATATGGAAAGTCAAGATTATACACAAGCGGAATCGGAGGATGAGCGGGAGACGAGGAGAAGGTCTAGAAGGACATCGTCGAGGAAAGGGTCTAGTTCATCGCCCAAAACtagcttAAGCGAATCGATTTCCGACATATACAACAGCTTGAACACAATCGAAAACAACGATTCTCTCCTGCTGCAGAAGTCGCCCAATTCGAGAGCAAAACTAGGGAAAAAAGGCAGAAACGATAGCGTGTCTCTTCCTTCGAGGCCGAAGATGATCCATACTCAAAAAACGAGGGTGCCCGTCGAGGCTAACGAAGACGGTCGAATTAGACACAAAACTAAAACGATGGTTACCAGAACGCAGCCAACGGAGCTTAAGTCGGCCTCAGgtgaAAGAATAAGACCCAGGACAAAAAATGTCAACTACCACGTTCTGAATCCAGAAAAACTGCCTCTTGCCACTTTCCCCAGTACCGATCAAACTCAAGAAGCTGTTGAGAATCTCTTGAAGGAGGCTTCTGTAGTATCAGCCAATGGAAATATATTATCAGAAGAGATTATAGAACATGCTCCTGATGTAGCTTCTGAACAAATTGTCGAGACAGAAGTACCTGTACCTGTTGGAATTGTTGAAGTTAGAACGAGACGGAATAGCACGAGAAGTACCAGAAATGTTATAGGACCGGGCAGCAAAGTTAGACTAGTCAAAGAAGGAATGATTGTTTCCAAAGTTAAAAGAAATAGCGAAAGTCAGAATGAGCCTGAATCGATTTTACCCGATGTTCATCAACAATCAGAACAGATATTCATTAAAGAGGAACGTCTTGGTTATACAAgtaTGAGTAACGACCAAGCGGAAGCAAATATAACAGAAGGAGAAGAACAACACCAAACTTTTAACGAATCTAAGCAAGATATGTCCGTCAACCATCAAAATATAGAGAACAGCCTAGACATACGTTATCATACCTCCAACCCCAACGTGATAAACGTAAAGCAAGAACTTTTGGATCCGACCGCCCTTCACGAATTGGCTGAGATTTCGATGCGTCATGCGAACAACACTACAAGTTTGTTCAAGTGCGAAATGTGCGACGAAGTGTTTTCTGATAGGGCGCAACTGCTGGTACACGTACCTATTCATATTTGA
Protein Sequence: MEESSFTLTWEDATTVVQTEEVISTMENEIIPAQSEEFIGEVQAEEYPDNVEPEDLVEHVGVVEEEVVQDNSQAEQEITLEDSQAADDGSVMYLTDDNVLVMHDGNSGNYSQEQLMEVTEEVITDQWGESCPEEIIVGSEEAVGAMEGQPVGDEDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLVNHMVAHQTDRPHGCNLCGVRYMRKSDLMNHLKSHAYIPESDAMEDEEHPLYEHSFDKPRKKPKGYAKKKKKKTVVKEEYENMFTTAETAPSSSRFNFQEPTDVKLLDGEIDNTDYLTTTTSTQEMEEEVDIKYPATDPKKPFVCQHCGVCFAREKALASHSRVHGGDSPFECQKCGEMFWDIALMQEHARTKHGELEDFDDDEDEDYSDSEETKYGTYYCPTCGLSFHRQDNLRRHQRIHIKEEYVNEHEFGHICNVCGESFQEALDLLAHAEVHARGSEYRCMICGEICPDENLLATHVQGIHTNLPPHTCALCGRTCKDSRTLLKHSWEHSKEKSFGCTKCSKTFHNKARLKRHMLSHRNKVVSCDVCGEDFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSHSMTPYCCAVCSDMFATAQDLILHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELDLISATNQVEEDSYAMDEHMESQDYTQAESEDERETRRRSRRTSSRKGSSSSPKTSLSESISDIYNSLNTIENNDSLLLQKSPNSRAKLGKKGRNDSVSLPSRPKMIHTQKTRVPVEANEDGRIRHKTKTMVTRTQPTELKSASGERIRPRTKNVNYHVLNPEKLPLATFPSTDQTQEAVENLLKEASVVSANGNILSEEIIEHAPDVASEQIVETEVPVPVGIVEVRTRRNSTRSTRNVIGPGSKVRLVKEGMIVSKVKRNSESQNEPESILPDVHQQSEQIFIKEERLGYTSMSNDQAEANITEGEEQHQTFNESKQDMSVNHQNIENSLDIRYHTSNPNVINVKQELLDPTALHELAEISMRHANNTTSLFKCEMCDEVFSDRAQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01188587;
90% Identity: iTF_00196575;
80% Identity: -