Basic Information

Insect: Polydrusus tereticollis
Gene Symbol: -
Assembly: GCA_963920685.1
Location: OY987328.1:151255499-151273142[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.6e-05 0.028 17.8 0.5 1 23 170 192 170 192 0.95

2 15 0.00045 0.15 15.6 0.6 3 23 200 220 199 220 0.99

3 15 0.00018 0.06 16.8 1.7 1 23 329 351 329 351 0.98

4 15 0.055 18 9.0 0.1 1 23 357 380 357 380 0.96

5 15 1.2e-06 0.00039 23.7 3.8 1 23 405 427 405 427 0.98

6 15 0.023 7.5 10.2 0.0 1 23 440 462 440 462 0.94

7 15 0.015 5.1 10.7 0.1 1 23 468 491 468 491 0.95

8 15 0.033 11 9.7 2.6 1 19 497 515 497 516 0.96

9 15 0.00085 0.28 14.7 4.7 3 23 527 547 525 547 0.98

10 15 0.008 2.6 11.6 0.3 2 23 553 574 552 574 0.97

11 15 1.7e-05 0.0056 20.0 0.4 1 23 582 604 582 604 0.98

12 15 0.0075 2.4 11.7 0.2 3 23 612 632 610 632 0.97

13 15 0.00024 0.078 16.4 0.3 1 23 638 660 638 661 0.95

14 15 0.27 88 6.8 1.2 1 23 675 697 675 697 0.96

15 15 0.00021 0.07 16.6 0.0 1 20 1095 1114 1095 1117 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.6e-05	0.028	17.8	0.5	1	23	170	192	170	192	0.95
2	15	0.00045	0.15	15.6	0.6	3	23	200	220	199	220	0.99
3	15	0.00018	0.06	16.8	1.7	1	23	329	351	329	351	0.98
4	15	0.055	18	9.0	0.1	1	23	357	380	357	380	0.96
5	15	1.2e-06	0.00039	23.7	3.8	1	23	405	427	405	427	0.98
6	15	0.023	7.5	10.2	0.0	1	23	440	462	440	462	0.94
7	15	0.015	5.1	10.7	0.1	1	23	468	491	468	491	0.95
8	15	0.033	11	9.7	2.6	1	19	497	515	497	516	0.96
9	15	0.00085	0.28	14.7	4.7	3	23	527	547	525	547	0.98
10	15	0.008	2.6	11.6	0.3	2	23	553	574	552	574	0.97
11	15	1.7e-05	0.0056	20.0	0.4	1	23	582	604	582	604	0.98
12	15	0.0075	2.4	11.7	0.2	3	23	612	632	610	632	0.97
13	15	0.00024	0.078	16.4	0.3	1	23	638	660	638	661	0.95
14	15	0.27	88	6.8	1.2	1	23	675	697	675	697	0.96
15	15	0.00021	0.07	16.6	0.0	1	20	1095	1114	1095	1117	0.94

Sequence Information

Coding Sequence: ATGGAAGAACCATCGTTTACTTTGACGTGGGAGGACGCCACGACTGTCGTCCAAACGGAGGAGGTTATATCCACCATGGAAAATGAAATAATCCCATCCCAGTCTGAGGAGTTCATCGGTGAAGTGCAGCCCGAAGTGTACCCTGAAAATGTGCAAGCTGATGACTTGGTTGAGCATGTGGGTGTTGTGGAAGAAGAGGTTGTGCAAGATAATTCCCAACCTGAACAAGATGTGTCTTTGGAAGAAACTCAGCCATCAGACGATAGTGTTATGTATTTAACAGatgATAACGTTTTGGTTATGCATGGAGGCAACTCTGAAACCTACACACAAGAACAGTTAATGGAAGTCACAGAGGAAGTGATCACTGATCAGTGggGTGAGAGCTGTCCAGAAGAAATAATAATTGGTTCAGAAGAAGCTGTTGGAGCCATGGAAGGACACCAAGTAGAGGATGAGGATATACCACTACCGACAGATCAAGATGAATACACTGCTGCCAGACCGTATCCTTGTGATTTTTGTAGCAGAAGGTTCAGAAAGAAAGCCAATCTGGTGAATCACATGGTCGCGCATCAAACAGACCGTCCCCATGGTTGTAATTTGTGTGGAGTAAGGTACATGAGGAAATCGGATTTGATGAACCATCTCAAAAGTCACGCTTATATTCCGGAATCTGATCCTGGAATGGAAGATGAGGAGCATCCTTTGTATGAGCACAGCTTCGATAAGCCGCGAAGAAAGGTGAAAGGTTACGGAAAAAGGAAGAAAAAGAAGGCCATCGTGAAAGAAGAATATGAAAGTATGTTTACAGCAGTAGAAACAGCTCCTTCCAGTTCGCGATTCCACTTCCAGGAACCCACCGACGTGAAGTTAATCGAAAGCGAAGTCGACCACAACGTCGACTACCTCACCGCCGGGACGGCGCAAGAGGAAGAGGAAGACGAAGACATGAAGTATCCGGTCACGGACCCTAAAAAGCCCTTCGTGTGTCAGCACTGTGGAGTCTGTTTTGCCAGAGAAAAAGCCTTGGCGTCCCACTCTAGGATACACGGGGGCGACAGCCCCTTCGAGTGCCAAAAGTGCGGGGAAATGTTTTGGGACGTGGCGCTTATGCAGGAACACGCAAGAACCAAACATGGTGAACTGGAAGATTTCGACGACGATGAAGATGAAGACTACTCGGACTCCGAGGAGACAAAGTACGGGACGTACTATTGTACCACTTGCGGTCTTTCCTTCCACAGACAAGACAATCTACGTAGACATCAGAGGATACACATAAAAGAAGAGTATGTCAATGAACACGAGTTTGGGCACATTTGTAACGTTTGTGGAGAATCTTTTCAGgAGGCACTTGATCTTCTTGCTCACGCTGAAATCCACGCACGCGGTTCCGAATACCGATGCATGATTTGCGGAGAAATCTGCATCGACGAAAATTCATTGGCTACGCACGTTCAAGGCGTCCACACGAACTTACCGCCGCACACGTGCGCGTTATGCGGACGCACCTGTAAGGACAGCAGGACGTTGCTGAAGCATTCCTGGGAACACTCAAAGGAAAAATCCTTTGGGTGTACTAAATGCTCCAAAACCTTTCACAATAAGGCGCGTCTTAAGCGCCACATGCTGTCGCACAGAAATAAAGTCGTAACGTGCGATGTGTGCGGAGAAGATTTCCCAGATGGGAGAAGTTTAATGAACCACAGGCACAGCCATAGCAGCGTGTCTGGAAGACAGTTTCCCTGCCGGGAGTGTGGGAAAACTTTCGGATCGAGGAGTTCGCAGCAGATTCATATTCGCATACATACAGGCGAGCGACCCTACGGTTGTCGTTTTTGCTGGAAAGCCTTTGCTGATGGCGGAACATTGAGGAAACACGAGCGGATTCATACCGGTGAGAAGCCTTACGCTTGCGCAGTATGCCCGAGGGCTTTCAATCAAAGAGTTGTTCTTAGGGAACATATACGGTCACATCATTCGGGCCCAGATCCCAAATATTCCCACGGTATGACTCCATACTGCTGTGCGGTATGTTCGGACATGTTCGCCACTTCCCAAGACTTGATTTTGCACCTTATCCATCATTGCGACATGAACACCGCCATGAAGAGACAGCCGCAGGTCGGTCCCAGAAAATATAAAAGAAGGAGAAAACTTAAGCCGCACGAGTTAGACTTGATATCGGCCACAAATCAGGTGGAGGAGGACAGTTACGCCATGGACGAGCAAATGGACAGTCAAGACTACGTCCAGGCCGAGTCCGATGAAGAGCGGGAGACGAGACGTCGGTCCAGGCGGACGTCTTCAAGAAAGGGGTCCAGCTCGTCGCCTAAAACTAGCATAAGCGAATCGGTTTCCGACATATACAACAGCCTGAATACGATCGAAAACAGCGACTCGCTCGTCTTGCCGAAATCGCCCACCTCAAAGGCGAGACTGGTGAAAAGAGGGAAGAACGATTCGGTGTCTCTACCCTCGAGACCGAAAATGATCCACACGCAAAAGACGAGGGTGCCCGTCGAGTCTGGTGATGACGGGCGCATCCGACACAAGACCAAAACGATGGTCACCAGGACGCAACCAGCTGAGATTAAGTCGGCAACAGGGGAAAGAATAAGACCCAGAACCAAAAATGTTAACTATCACGTCCTTAATCCGGAAAAATTGCCAGTTGCTACTTTTCCAGTAAACGACCAAACTCAAGAAGCTGTCGAGAATCTCTTAAAGGAATCTGCTGAAGTATCTGCAAATGGAAATGTGTTGACGGAAGAGATTGTTGATCATGCGCCTGATATAGCTTCAGAACAAACTGTCGAGACAGAGGCACCAGTGCCGGTTGGAATCGTCGAGGTGAGAACGAGACGGAGCAGTACTAGAAGCACCAGAAATATCATAGGGCCGGgtAGCAAGGTCAGACTAGTCAAAGAAGGGATGGTCGTCTCCAAAGTTAAAAGAAACAGTGAAAGTCAAAACGAGCCCGAGTCAATTTTGCCCGATGTTAATCAGCAGGAACAAATCTTTATTAAAGAGGAACGTCTTGGTTTCGCTAaCATAAATAACGACTTACATGAAACGAATTTGACGGAGGCAGAAGATCAGCAGAACTTAACCGAGGTAGGTCAGGAATTTCCGCTGGAACGAAAGGAGACCATCCACCTGCAAAATTTCAACTCGACTCCGAACGTTATAAATATCAAGCAGGAACTGTTGGATCCGACGGCGCTTCATGAATTGGCCGAAATTTCGATGAGGCACGCCAACAGCACGACCAATCTGTTTAAGTGTGAAATGTGCGACGAAGTTTTTTCAGATAGGGCGCAGTTGCTGGTGCACGTTCCCATCCATATTTGA
Protein Sequence: MEEPSFTLTWEDATTVVQTEEVISTMENEIIPSQSEEFIGEVQPEVYPENVQADDLVEHVGVVEEEVVQDNSQPEQDVSLEETQPSDDSVMYLTDDNVLVMHGGNSETYTQEQLMEVTEEVITDQWGESCPEEIIIGSEEAVGAMEGHQVEDEDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLVNHMVAHQTDRPHGCNLCGVRYMRKSDLMNHLKSHAYIPESDPGMEDEEHPLYEHSFDKPRRKVKGYGKRKKKKAIVKEEYESMFTAVETAPSSSRFHFQEPTDVKLIESEVDHNVDYLTAGTAQEEEEDEDMKYPVTDPKKPFVCQHCGVCFAREKALASHSRIHGGDSPFECQKCGEMFWDVALMQEHARTKHGELEDFDDDEDEDYSDSEETKYGTYYCTTCGLSFHRQDNLRRHQRIHIKEEYVNEHEFGHICNVCGESFQEALDLLAHAEIHARGSEYRCMICGEICIDENSLATHVQGVHTNLPPHTCALCGRTCKDSRTLLKHSWEHSKEKSFGCTKCSKTFHNKARLKRHMLSHRNKVVTCDVCGEDFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSHGMTPYCCAVCSDMFATSQDLILHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELDLISATNQVEEDSYAMDEQMDSQDYVQAESDEERETRRRSRRTSSRKGSSSSPKTSISESVSDIYNSLNTIENSDSLVLPKSPTSKARLVKRGKNDSVSLPSRPKMIHTQKTRVPVESGDDGRIRHKTKTMVTRTQPAEIKSATGERIRPRTKNVNYHVLNPEKLPVATFPVNDQTQEAVENLLKESAEVSANGNVLTEEIVDHAPDIASEQTVETEAPVPVGIVEVRTRRSSTRSTRNIIGPGSKVRLVKEGMVVSKVKRNSESQNEPESILPDVNQQEQIFIKEERLGFANINNDLHETNLTEAEDQQNLTEVGQEFPLERKETIHLQNFNSTPNVINIKQELLDPTALHELAEISMRHANSTTNLFKCEMCDEVFSDRAQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01188587;
90% Identity: -
80% Identity: -