Dabb027140.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000103.1:30975873-31012499[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.6e-05 0.0066 18.5 0.7 1 23 171 193 171 193 0.95 2 15 0.00039 0.056 15.6 0.6 3 23 201 221 200 221 0.99 3 15 0.00031 0.044 15.9 0.2 1 23 325 347 325 347 0.98 4 15 0.052 7.4 8.9 0.1 1 23 353 376 353 376 0.96 5 15 2.2e-07 3.1e-05 25.8 2.7 1 23 401 423 401 423 0.98 6 15 0.019 2.7 10.3 0.0 1 23 436 458 436 458 0.94 7 15 7.1 1e+03 2.2 0.5 2 23 465 487 464 487 0.87 8 15 0.029 4.1 9.7 2.6 1 19 493 511 493 512 0.96 9 15 0.00073 0.1 14.7 4.7 3 23 523 543 521 543 0.98 10 15 0.0069 0.98 11.6 0.3 2 23 549 570 548 570 0.97 11 15 1.5e-05 0.0021 20.0 0.4 1 23 578 600 578 600 0.98 12 15 0.0065 0.92 11.7 0.2 3 23 608 628 606 628 0.97 13 15 0.00021 0.029 16.5 0.3 1 23 634 656 634 657 0.95 14 15 0.23 33 6.8 1.2 1 23 671 693 671 693 0.96 15 15 0.00061 0.087 15.0 0.0 1 20 1092 1111 1092 1114 0.94
Sequence Information
- Coding Sequence
- ATGGAAGAACCATCATTTACTCTAACCTGGGAGGATGCCACTACAGTTGTCCAAACAGAAGAGGTCATATCCACTATGGAAAATGAAATAATTCCATCACAGTCAGAAGAATTCATTGGGGAAGTGCAAGCAGAGGAGTATCCAGAGAATGTGCATCCAGATGACTTAGATCAACATGTGGGGGTGGTTGAAGAAGAGgtTGTGCAAGATAATTCCCAAACTGAACAAGAGGTGACGTTAGAAGAAACTCATCCAGGTGATGATGGAAGTGTTATGTATTTAACAGATGACAATGTTTTGGTAATGCATCAAGGAAACGCTGAAACCTATTCACAAGAACAATTAATGGAAGTAACAGAAGAAGTGATCACTGATCAGTGGGGTGAAGGCTGTCAAGAAGAAATAATAGTTGGTTCAGAGGAAGCTATTGGAGCCATGGAAGGACAGCCAGTAGAAGATGAAGACATACCATTACCAACAGATCAAGATGAGTATACTGCAGCAAGACCCTATCCATGCGATTTTTGTAGCAGGAGattcagAAAAAAAGCAAATCTAATGAATCATATGGTAGCCCATCAGACTGATCGTCCCCACGGATGTAACTTGTGCGGTGTACGTTACATGAGGAAATCAGATTTGATGAATCACCTTAAAAGTCATGCCTATATTCCAGAATCTGATCCTGTAGAAGatgaAGATCATCCTCTTTACGAACATAGTTTTGATAAACCCCGAAAGAAGGTAAAAGGTTATggcaaaaagaagaaaaagaaagctACAGTCAGAGAAGATTATGATATGTTTTCAACAGAAACAGCTTCCAGTTCGCGTTATAACTTTCAAGAACCGACCGATGTCAAgttaatagatggagaaattgaaCACAGCACTGAATACATCTCTGAAGCGACCCAAGAAATCGAAGAAGAAACGGATATTAAGTACCCGGTTACTGATCCGAAAAAGCCTTTTGTATGCCAGCATTGTGGAGTTGGATTTGCAAGAGAAAAAGCATTGGCGTCCCACTCTAGAATACATGGTGGAGATAGTCCTTTTGAGTGCCAGAAGTGTGGCGAAATGTTTTGGGATATTGCGCTTATGCAGgaaCATGCAAGAACCAAACATGGGGATATTGAGGATTtcgacgacgatgaagatgaggATTACTCTGATTCAGAAGAAACTAAATATGGAACATATTACTGTCCTACTTGTGGTCTTTCTTTCCACAGGCAAGACAACTTACGGCGACATCAAAGGATACACATCAAAGAAGAATATGTTAACGAACATGAGTTTGGACATATTTGTAATGTTTGTGGCGAATCTTTTCAGGAGGCACTTGATCTCCTCGCCCACGCAGAAGTCCATGCACGTGGATCAGAATGTCGTTGCATGATTTGTGGAGAAATCTGCCTTGATGAAAATTTATTGGCTACACACGTTCAAGGTGTCCATACAAATTTGCCACCGCATACTTGCGCCTTGTGTGGACGTACGTGCAAAGACAGCAGGACTTTGTTGAAGCATTCATGGGAACATTCAAAGGAAAAATCTTTTGGATGTACAAAATGCTCCAAGACCTTTCATAACAAGGCGCGCCTTAAGCGCCATATGCTGTCACATAGaaataaagTCGTGACGTGCGATGTATGCGGAGAAGATTTCCCAGATGGAAGAAGTTTGATGAATCACAGACATAGCCATAGTAGTGTGTCTGGAAGACAGTTTCCTTGCCGAGAATGTGGAAAAACTTTTGGATCAAGAAGTTCGCAGCAGATTCATATTCGTATACATACAGGTGAAAGACCTTACGGGTGCCGATTTTGTTGGAAAGCTTTTGCAGATGGTGGAACTTTGCGGAAGCATGAACGTATCCATACTGGTGAAAAACCCTATGCTTGTGCAGTGTGTCCCAGAGCTTTCAATCAGAGGGTTGTTCTTAGAGAACATATAAGGTCACATCATTCTGGTCCCGATCCCAAATATTCACACAGTATGACACCTTATTGCTGTGCAGTGTGTTCAGATATGTTTGCCACCTCGCAAGATCTAATTTTACATCTGATCCATCATTGTGACATGAACACTGCTATGAAAAGGCAACCGCAGGTCGGCCCTAGAAAATATAAAAGAAGgaggAAACTTAAGCCACACGAATTAGATCTAATATCGGCCAATAATACAGTGGAAGAGGAAAGTTATGTGATGGATGATCATATGGGAAATCAAGACTATGCCCAGGCCGAATCTGATGAAGAACGAGAAACAAGAAGGAGATCTCGACGGACGTCTTCAAGAAAAGGCTCTAGTTCGTCACCAAAAACTAgCATAAGCGAATCAATTTCTGACATATACAACAGCTTAAACACAATAGAAAACGATACTCTAATGTTACCCAAGTCGCCTACCTCAAAATCGAAACTATCAAAGAAAATCAAGAACGACGCTATGCCTCTTCCTTCACGACCAAAGATGATTCACACTCAAAAAACGAGAGTACCTGTTGAGGCTGGTGAAGATGGTCGGATCAGACATAAGACTAAAACTATGGTTACCAGGACGCAGCCTACAGAGATTAAGTCAGTTACAGGTGAAAGAATAAGACCCAGAACAAAAAATGTTAACTACCATGTTTTAAATCCTGAGAAACTTCCTCTTGCTACTTTTCCAACTAACGATCAAACACAGGAGGCTGTTGAAAATCTTCTTAAAGAAACTTCTGAAGTGGCAACAAATGGAAATGTGTTGACAGAAGAGattgtTGAACATGCCCCGGATGTGGCAGCTGAACAAACTGTGGAGACAGAATCACCAGTACCTGTTGGAATTGTTGAGGTTAGAACAAGACGGAACAGCACCAGAAGTACAAGAAATGTTATAGGGCCAGGAAGCAAAGTTAGACTAGTCAAAGAAGGAATGATTGTTTCCAAAGTTAAAAGAAACAGTGAATGTCAAAACGAGCCAGAATCTATTTTACCCGATAATAACCAGCAGTctgaagaaatatatattaaagaagaaCGTCTTGGTTTTACTAaccaCAGTAATGACCAATTAGACACAAGTTTAAGGGAAGCGGAAGAGCAACAACATACCGTGGATGAAACAAATCAAGAAATTCTCGACCAACAACAAAACATAGAGAACATCCCTACTGATAACTCAAATCCCAacgtaataaatattaaacaagaactcTTGGACCCGACTGCGCTTCACGAATTAGCTGAAATATCAATGCGACACGCAAACAATACCACCAGCCTGTTTAAGTGTGAAATGTGTGATGAAGTCTTTGCTGACAGAGCACAGTTGCTGATACATGTACCCATTCACATTTGA
- Protein Sequence
- MEEPSFTLTWEDATTVVQTEEVISTMENEIIPSQSEEFIGEVQAEEYPENVHPDDLDQHVGVVEEEVVQDNSQTEQEVTLEETHPGDDGSVMYLTDDNVLVMHQGNAETYSQEQLMEVTEEVITDQWGEGCQEEIIVGSEEAIGAMEGQPVEDEDIPLPTDQDEYTAARPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYMRKSDLMNHLKSHAYIPESDPVEDEDHPLYEHSFDKPRKKVKGYGKKKKKKATVREDYDMFSTETASSSRYNFQEPTDVKLIDGEIEHSTEYISEATQEIEEETDIKYPVTDPKKPFVCQHCGVGFAREKALASHSRIHGGDSPFECQKCGEMFWDIALMQEHARTKHGDIEDFDDDEDEDYSDSEETKYGTYYCPTCGLSFHRQDNLRRHQRIHIKEEYVNEHEFGHICNVCGESFQEALDLLAHAEVHARGSECRCMICGEICLDENLLATHVQGVHTNLPPHTCALCGRTCKDSRTLLKHSWEHSKEKSFGCTKCSKTFHNKARLKRHMLSHRNKVVTCDVCGEDFPDGRSLMNHRHSHSSVSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYSHSMTPYCCAVCSDMFATSQDLILHLIHHCDMNTAMKRQPQVGPRKYKRRRKLKPHELDLISANNTVEEESYVMDDHMGNQDYAQAESDEERETRRRSRRTSSRKGSSSSPKTSISESISDIYNSLNTIENDTLMLPKSPTSKSKLSKKIKNDAMPLPSRPKMIHTQKTRVPVEAGEDGRIRHKTKTMVTRTQPTEIKSVTGERIRPRTKNVNYHVLNPEKLPLATFPTNDQTQEAVENLLKETSEVATNGNVLTEEIVEHAPDVAAEQTVETESPVPVGIVEVRTRRNSTRSTRNVIGPGSKVRLVKEGMIVSKVKRNSECQNEPESILPDNNQQSEEIYIKEERLGFTNHSNDQLDTSLREAEEQQHTVDETNQEILDQQQNIENIPTDNSNPNVINIKQELLDPTALHELAEISMRHANNTTSLFKCEMCDEVFADRAQLLIHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01188587;
- 90% Identity
- -
- 80% Identity
- -