Pnig025268.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pentalonia nigronervosa
Gene Symbol
-
Assembly
GCA_014851325.1
Location
scaffold:100727-110035[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 8.6e-05 0.0099 16.9 0.8 2 23 138 159 137 159 0.94
2 19 0.001 0.12 13.4 0.0 1 23 169 191 169 191 0.94
3 19 0.00025 0.029 15.4 1.4 1 23 197 219 197 219 0.96
4 19 3.9e-05 0.0045 17.9 4.5 1 23 225 247 225 247 0.97
5 19 1.1e-05 0.0013 19.6 0.1 1 23 253 275 253 275 0.98
6 19 0.00025 0.029 15.4 2.9 1 23 281 303 281 303 0.97
7 19 0.0011 0.12 13.4 1.8 2 20 310 328 309 330 0.93
8 19 2.7e-08 3.2e-06 27.9 1.0 1 23 337 359 337 359 0.97
9 19 2e-05 0.0023 18.9 0.4 1 23 365 387 365 387 0.97
10 19 8.5e-07 9.8e-05 23.2 0.4 1 23 393 415 393 415 0.97
11 19 2.6e-07 3e-05 24.8 0.6 1 23 421 443 421 443 0.98
12 19 1.5e-07 1.7e-05 25.5 0.5 1 23 449 471 449 471 0.98
13 19 1.4e-06 0.00016 22.5 0.1 1 23 477 499 477 499 0.97
14 19 0.16 18 6.6 2.0 1 21 510 530 510 531 0.95
15 19 6.7e-05 0.0077 17.2 1.2 1 23 545 567 545 567 0.97
16 19 4.2e-05 0.0049 17.8 1.1 1 23 574 596 574 596 0.96
17 19 6.3e-05 0.0072 17.3 4.9 1 23 602 624 602 624 0.97
18 19 0.00013 0.015 16.3 1.0 1 23 630 652 630 652 0.98
19 19 0.00052 0.06 14.4 1.6 2 23 661 682 661 682 0.92

Sequence Information

Coding Sequence
ATGAACGGTGTGGAAATTGTTGTAACAGAAAAATCTGGGGAAAAACGTGTGGTCACTGTCCAAGGAGCAACTGTTGAAAGTACAGATGATCGACGGGTACATGAAAATATTGGATATGGAATATTTGTTCAAGGATTAAATGGAGACTTAGCCCATCTGTTGTTGGATCAAGAAGAAGTGGGGACTATGACTGTAGAAAATTTAGCAAAAATAATCAATGGTCAAGAAGCAATAAGTGTATCTGGACAAATCCAAATAAATAATTTAAAAATCGAAAATGTGGATTTATCTAATCAAGAAGGTACAACAGAAATTTATATTGCAGAAGAAAAGAATATTGCAATCGACATGGCTAATGAGGCTGTGGCTAACTGTCAAAGTCTTATGCGACCTAACCCCATGGATGAACTACAATGCCAAAAATGTGGCAAACGGTTCTCAGATGTTAATACATTAAAATCTCACGAGGTGTCTCATGAAGATGGTCAAAATATTGATTGTAAATTTTTGTGTACTGTTTGTGGAGAAAAATTTGATAAGGCAAATGCATTGAGTGCACATTTGGTTATTCATCGCAATATCAAGCTACATCATTGTGAAGTTTGCGGGTTAGTTTTTTCTGATGATCAATCTTTAAAAGAACATACTCAAGTACACTCTCGTCAGAAACTACACACTTGCCAAAAATGTGATAAGAAATTTCCCTCAAGTTACAGATTGTTTCGTCATATGACTATTCATACAGAAAATCCACCTTTTGTATGTGATCAGTGTGGTGTATCTGTTGCAAATAAAAGTGATTTAAAACTTCACATTATGAAACATACTGGGAGTGCTGTATATACATGCACTGAATGTGATAAAAGTTTTTTAAAGCCATCTTGCCTGCAACGACATTCAAGTGTACATACTGGTGAACGACCATTGCATTGTAAAACTTGTAACATGACATTTACCTATTCTAGTAATTTGTGTGGGCACTTAATAGCTAGTGCTAAAGCAAAGCCACATCCGTGTACTATGTGTGAAAAATCGTTTAGACGACCATCTGATTTAGAGCGCCATATGATGATTCATACTGGTGAACGTCCATTTGTATGTCAAGTTTGCTCCATGTCATTTATTACCAATTACAATTTGAAGGTGCATTCAATGATCCATAATGGTGGTTTGCCATATCCATGTACATCTTGTGATAAAGCGTTTAGCAAACCTTCAGAATTACAGAGACATAAATTGGTACACTCAAGAGAAAAGCCATTTTCATGTGTCAAATGTGAAGCTACATTCACAAATCAAAGTAACCTTAAAGCTCATATGATAACTCATACAGGTCGAAAACCATTCCCCTGTCGTATTTGTAATAAAGGATTCACACGTCCATCAGATGTCAAACGACATATGCTTACGCATACCGGTTGTCGTCCTTTTGCATGTGATGTATGTGGCTTGGCCTTTGCTGACTCGTCAAATTTAAAAAAACATTCGTTGACCCACTCTAAAGATGATCAAAAACTCGCTTTACAACATCAATGTCCATCGTGTTGCATGTCCTTTTTCTCATATGAACAACTGAATGAACATATGATCTCTGGAAATTGTACTAACAATGGTGGGCAAGCCGAACCCAAGTACTCATGCAAAGAATGTGGTGCTACGTTTAATCATGCACTTCACTTACAGGAGCATGCCATTATGCATTCGAATCACAGATCAGTGCACAGGTGTGACGTGTGCAACAAAACATTCATTCAAGAGTCATTTTTGATAGCTCATAAAGCTTCTCATACTGAATCACGACCTCACCGTTGCGATATTTGCTTGAAGAGATTTAAGAGTACATCTCATCTAAAAAATCACGTGATGATACATTCAGGCGTAAAGCCTTTTGAGTGTACTGTTTGCAACAAGTCGTTTTTGAAACTAGCTTCATTGAGACGTCATTATGCGACACATGATCGTGTAAATTTTTCATCTGCTGTTTGCCATCAATGTGGTAAATCATTTCTCAATCAAGAGTATTTGAAAAAACACAGTGTAGTACATGCTGATGCGTAA
Protein Sequence
MNGVEIVVTEKSGEKRVVTVQGATVESTDDRRVHENIGYGIFVQGLNGDLAHLLLDQEEVGTMTVENLAKIINGQEAISVSGQIQINNLKIENVDLSNQEGTTEIYIAEEKNIAIDMANEAVANCQSLMRPNPMDELQCQKCGKRFSDVNTLKSHEVSHEDGQNIDCKFLCTVCGEKFDKANALSAHLVIHRNIKLHHCEVCGLVFSDDQSLKEHTQVHSRQKLHTCQKCDKKFPSSYRLFRHMTIHTENPPFVCDQCGVSVANKSDLKLHIMKHTGSAVYTCTECDKSFLKPSCLQRHSSVHTGERPLHCKTCNMTFTYSSNLCGHLIASAKAKPHPCTMCEKSFRRPSDLERHMMIHTGERPFVCQVCSMSFITNYNLKVHSMIHNGGLPYPCTSCDKAFSKPSELQRHKLVHSREKPFSCVKCEATFTNQSNLKAHMITHTGRKPFPCRICNKGFTRPSDVKRHMLTHTGCRPFACDVCGLAFADSSNLKKHSLTHSKDDQKLALQHQCPSCCMSFFSYEQLNEHMISGNCTNNGGQAEPKYSCKECGATFNHALHLQEHAIMHSNHRSVHRCDVCNKTFIQESFLIAHKASHTESRPHRCDICLKRFKSTSHLKNHVMIHSGVKPFECTVCNKSFLKLASLRRHYATHDRVNFSSAVCHQCGKSFLNQEYLKKHSVVHADA