Pace004848.1
Basic Information
- Insect
- Periphyllus acericola
- Gene Symbol
- -
- Assembly
- GCA_949715065.1
- Location
- OX454265.1:5490645-5493687[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00087 0.12 13.4 0.9 2 19 142 159 141 163 0.89 2 19 0.0014 0.2 12.7 0.1 1 23 173 195 173 195 0.92 3 19 0.00038 0.054 14.5 0.5 1 23 201 223 201 223 0.96 4 19 2.2e-05 0.003 18.5 3.3 1 23 229 251 229 251 0.97 5 19 1e-05 0.0014 19.5 0.1 1 23 257 279 257 279 0.98 6 19 0.00021 0.029 15.4 2.9 1 23 285 307 285 307 0.97 7 19 0.00086 0.12 13.4 1.8 2 20 314 332 313 334 0.93 8 19 2.2e-08 3.2e-06 27.8 1.0 1 23 341 363 341 363 0.97 9 19 1.6e-05 0.0023 18.8 0.4 1 23 369 391 369 391 0.97 10 19 6.9e-07 9.8e-05 23.2 0.4 1 23 397 419 397 419 0.97 11 19 7.2e-07 0.0001 23.1 1.0 1 23 425 447 425 447 0.98 12 19 1.2e-07 1.7e-05 25.5 0.5 1 23 453 475 453 475 0.98 13 19 1.1e-06 0.00016 22.5 0.1 1 23 481 503 481 503 0.97 14 19 0.12 17 6.7 1.6 1 21 514 534 514 535 0.94 15 19 5.4e-05 0.0077 17.2 1.2 1 23 549 571 549 571 0.97 16 19 3.4e-05 0.0049 17.8 1.1 1 23 578 600 578 600 0.96 17 19 5.1e-05 0.0072 17.3 4.9 1 23 606 628 606 628 0.97 18 19 0.0001 0.015 16.3 1.0 1 23 634 656 634 656 0.98 19 19 0.00042 0.06 14.4 1.6 2 23 665 686 665 686 0.92
Sequence Information
- Coding Sequence
- atGAACGGTGGTGTTGAAATTGTCGTCACAGAAAAATCTGGGGAAAAACGTTTGGTTACTGTCCAAGGAGCAACTGTTGAAGGATCAGATGATCGTCGAgtccatgaaaataatatgggATATGGAATATTTGTCCAAGGATTAAATGGGGATTTAGCCCATTTATTGTTGGACCAAGAAGAGGTTGGTACTATGACAGTTGAGCATTTAGCAAAAATTATCAATGGCCAACAAGAAATAAGTGTGTCTGGACAAAtccaaataaataacttaaaaattgaaaatgtggaTATATCTAATCAAGAAAGTGGTGCAGCAGAAATTTATGTTGCTGAAGGTAAGGATTCAATGGCAATTGATATGGCTAACGAAGCTGTTGAAACCTGTCAAAGTCTTATGCGACTTGACCCAATGGACGAATTACAATGTCAAAAATGTGGTAAACGATTTGCAGACATAAATACCTTAAAATCTCATGATACAACTCACGAAGAAGGCCACAATGTTGAATGTAAATTTTTGTGTACGGTTTGTGGAGAAAAATTTGACAAGGCAAATGCATTGAGTGCACATTTGGTTCAACATCGTAATATTAAGTTACACCACTGTGAAGTTTGTGGATTAGTATTCTCTGATGACCAAGCATTAAAAGAACATGCTCAGGTACACTCTCGCCAGAAACTGCACCCTTGTCAAAAatgtgaTAAGAAATTTCCCTCAAGTTACAGATTATTTCGTCATATGACCGTTCATACAGAAAATCCTCCATTTGTTTGTGATCAGTGTGGTGTGACTGTGGCaaataaaagtgatttaaaactACACATTATGAAACATACTGGTAGTGCTGTGTATACTTGTACTGAGTGCGACAAGAGCTTCCTTAAGCCATCTTGCTTGCAACGACATTCAAGTGTTCATACTGGTGAGCGACCATTGCActgtaaaacttgtaatatgACATTTACCTATTCTAGTAATTTGTGTGGACATTTAATAGCTAGTTCTAAAGCAAAGCCGCATCCGTGTACTATGTGTGAAAAATCATTTAGACGTCCATCTGATTTAGAACGCCATATGATGATACATACTGGCGAACGTCCATTTGTTTGTCAAGTATGCTCTATGTCATTTATTACTAACTATAATTTGAAAGTGCATTCAATGATCCACAATGGAGGTTTGCCTTATCCATGTACATCTTGCGATAAAGCATTCAGCAAACCTTCTGAATTGCAGAGACATAAATTGGTTCATTCGAGAGAAAAACCATTTTCATGTGTCAAATGTGAATCAACATTCACAAATCAAAGTAATCTTAAAGCTCATATGATAACGCACACCGGTCGAAAACCATTTCCTTGCCGTATTTGCAATAAGGGATTTACCCGTCCATCAGATGTTAAGCGGCATATGCTTACACATACTGGTTGTCGTCCATTTGCATGTGATGTATGTGGTTTGGCTTTTGCAGACTcgtctaatttaaaaaaacactcgTTGACCCATTCTAAAGATGATCAAAAACTCGCTTTGCAACATCAGTGTCCATCATGTTGTATATCGTTTTTTTCATATGAGCAGCTCAATGAACACATGATATCTGGAAATTGTACCAACAATAGTGGTCAAGCAGAACCCAAGTATTCATGTAAAGAATGTGGTGCTACATTCAATCATGCATTACATCTACAAGAGCATGCTATAATGCATTCCAATCATCGGTCTGTGCACAGGTGTGATGTGTGCAATAAAACATTCATACAAGAATCATTTTTGATTGCTCATAAGGCTTCTCATACCGAATCACGGCCCCATCGTTGCGACATTTGTTTAAAAAGGTTCAAGAGCACATCTCATTTGAAGAACCACGTGATGATTCATTCAGGTGTCAAGCCCTTTGAGTGTACGGTTTGTAAcaagtcatttttaaaattagcttCGTTAAGACGACATTATGCCACTCACGATCGAGTAAATTTCTCTTCTGCTGTTTGTCACCAATGtggaaaatcatttttgaatcaaGAGTACTTGAAAAAACATAGTGTAGTACATACtgatgcataa
- Protein Sequence
- MNGGVEIVVTEKSGEKRLVTVQGATVEGSDDRRVHENNMGYGIFVQGLNGDLAHLLLDQEEVGTMTVEHLAKIINGQQEISVSGQIQINNLKIENVDISNQESGAAEIYVAEGKDSMAIDMANEAVETCQSLMRLDPMDELQCQKCGKRFADINTLKSHDTTHEEGHNVECKFLCTVCGEKFDKANALSAHLVQHRNIKLHHCEVCGLVFSDDQALKEHAQVHSRQKLHPCQKCDKKFPSSYRLFRHMTVHTENPPFVCDQCGVTVANKSDLKLHIMKHTGSAVYTCTECDKSFLKPSCLQRHSSVHTGERPLHCKTCNMTFTYSSNLCGHLIASSKAKPHPCTMCEKSFRRPSDLERHMMIHTGERPFVCQVCSMSFITNYNLKVHSMIHNGGLPYPCTSCDKAFSKPSELQRHKLVHSREKPFSCVKCESTFTNQSNLKAHMITHTGRKPFPCRICNKGFTRPSDVKRHMLTHTGCRPFACDVCGLAFADSSNLKKHSLTHSKDDQKLALQHQCPSCCISFFSYEQLNEHMISGNCTNNSGQAEPKYSCKECGATFNHALHLQEHAIMHSNHRSVHRCDVCNKTFIQESFLIAHKASHTESRPHRCDICLKRFKSTSHLKNHVMIHSGVKPFECTVCNKSFLKLASLRRHYATHDRVNFSSAVCHQCGKSFLNQEYLKKHSVVHTDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418464;
- 90% Identity
- iTF_01167894;
- 80% Identity
- -