Agos001402.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphis gossypii
Gene Symbol
-
Assembly
GCA_004010815.1
Location
NW:438791-447238[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 5.6e-05 0.0042 17.0 0.5 2 23 139 160 138 160 0.94
2 19 0.00029 0.022 14.7 0.1 1 23 170 192 170 192 0.95
3 19 0.00069 0.052 13.5 0.4 1 23 198 220 198 220 0.96
4 19 1.9e-05 0.0014 18.5 2.8 1 23 226 248 226 248 0.96
5 19 8e-06 0.0006 19.6 0.1 1 23 254 276 254 276 0.98
6 19 0.00018 0.014 15.4 2.9 1 23 282 304 282 304 0.97
7 19 0.00076 0.057 13.4 1.8 2 20 311 329 310 331 0.93
8 19 2e-08 1.5e-06 27.8 1.0 1 23 338 360 338 360 0.97
9 19 1.4e-05 0.0011 18.9 0.4 1 23 366 388 366 388 0.97
10 19 6e-07 4.6e-05 23.2 0.4 1 23 394 416 394 416 0.97
11 19 1.8e-07 1.4e-05 24.8 0.6 1 23 422 444 422 444 0.98
12 19 1.1e-07 7.9e-06 25.5 0.5 1 23 450 472 450 472 0.98
13 19 9.9e-07 7.5e-05 22.5 0.1 1 23 478 500 478 500 0.97
14 19 0.1 7.9 6.7 1.6 1 21 511 531 511 532 0.94
15 19 4.7e-05 0.0036 17.2 1.2 1 23 546 568 546 568 0.97
16 19 3e-05 0.0023 17.8 1.1 1 23 575 597 575 597 0.96
17 19 4.4e-05 0.0033 17.3 4.9 1 23 603 625 603 625 0.97
18 19 0.0003 0.023 14.7 1.1 1 23 631 653 631 653 0.97
19 19 0.00037 0.028 14.4 1.6 2 23 662 683 662 683 0.92

Sequence Information

Coding Sequence
ATGAACGGTAGCGTGGAAATTGTTGTTACGGAAAAATCTGGTGAAAAACGTTTAGTAACTGTTCAAGGAGCAACTGTTGAAAGTGCAGATGATAGACGagTGCATGAAAATATTGGATATGGGATATTTGTTCAAGGATTAAATGGAGATTTAGCCCATCTATTGCTAGATCAAGAAGAAGTGGGGACTATGACTGTAGAAAGTTTGgcaaaaataatcaatggCCAAGAAGCTATAAGTGTATCAGGGCAaatccaaataaataatttaaaaatcgaaaatgtgGATTTATCTAACCAAGAAGGAACAACAGAAATTTATATtgctgaagaaaaaaatattgcaattgACATGGCCAATGAGGCGGTGGCAAACTGTCAAAGTCTTATGCGACCTAATCCCATGGATGAACTACAATGTCAAAAATGTGGCAAACGATTTTCAGATGttaatgctttaaaatctCATGAGGTGTCTCATGAAGATGGCCAAAATGTTGAGTGTAAATTTTTGTGTAGCGTTTGTGGAGAAAAATTTGATAAGGCAAATGCATTGAGTGCACATTTACTCATTCATCGCAATATCAAGTTACACCATTGTGAAGTTTGTGGATTAGTTTTTCCTGATGATCAATCTTTAAAAGAACATGCTCAAATACACTCTCGTCAGAAACTACACGCTTGTGaaaaaTGTGATAAGAAATTCCCCTCAAGTTACAGATTGTTTCGTCATATGACAATTCATACAGAAAATCCTCCTTTTGTTTGTGATCAATGTGGTGTGTCTGTGGCCAATAAAAGTGATTTAAAACTTCACATCATGAAACATACTGGGAGTGCTGTGTACACATGCACTGAATGTGATAAGAGTTTTTTAAAGCCATCCTGTCTACAACGACATTCGAGCGTACATACTGGTGAACGACCATTGCATTGTAAAACTTGTAACATGACATTTACTTATTCCAGTAATTTATGTGGGCACCTGATAGCTAGTTCAAAAGCAAAGCCACATCCGTGTACTATGTGTGAAAAATCATTTCGACGACCTTCTGATTTAGAGCGTCATATGATGATTCATACGGGTGAACGTCCGTTTGTCTGTCAGGTTTGCTCCATGTCATTTAttaccaattataatttaaaagtacattCAATGATCCATAACGGGGGTTTACCATATCCATGCACATCATGTGATAAAGCGTTTAGCAAACCTTCAGAATTGCAGAGACATAAATTGGTACACTCAAGAGAAAAGCCATTTTCATGTGTAAAATGTGAAGCTACATTCACAAATCAGAGTAACCTTAAAGCTCATATGATAACTCATACAGGTCGAAAACCATTTCCCTGTCGTATTTGCAATAAAGGGTTTACACGTCCATCAGATGTGAAGCGTCATATGCTTACACATACTGGTTGTCGTCCTTTTGCATGTGATGTTTGTGGTTTGGCATTTGCCGATTcgtcaaatttgaaaaaacattCGTTGACCCACTCTAAAGATGATCAAAAACTCGCTTTACAACATCAATGTCCATCATGTTGCATATCCTTTTTCTCATATGAACAACTCAATGAACATATGATTTCTGGAAATTGTACTAATAATAGCGGTCAAGCTGATCCCAAGTACTCGTGCAAAGAATGTGGTGCTACATTTAACCATGCACTTCACTTACAGGAGCATGCTATCATGCATTCAAATCACAGATCAGTGCATAGATGTGATGTGTGCAACAAAACATTCATTCAAGAGTCGTTTTTGATTGCACATAAAGCTTCTCATACTGAATCGCGACCTCACCGTTGCGACATTTGTTTGAAGAGATTCAAGAGTACATCTCATCTAAAAAACCATGTGATGATACATTCTGGTGTAAAGCCTTTTGAATGTACTGTTTGTAACAAGTCATTTTTGAAACTTGCTTCATTGAGACGTCACTTTGCCACACATGATCGTATAAATTTCTCATCCGCTGTTTGTCACCAATGTGGAAAATCATTCCTCAATCAAGagtatttgaaaaaacacAGTGTAGTACATGCTGATACGTAA
Protein Sequence
MNGSVEIVVTEKSGEKRLVTVQGATVESADDRRVHENIGYGIFVQGLNGDLAHLLLDQEEVGTMTVESLAKIINGQEAISVSGQIQINNLKIENVDLSNQEGTTEIYIAEEKNIAIDMANEAVANCQSLMRPNPMDELQCQKCGKRFSDVNALKSHEVSHEDGQNVECKFLCSVCGEKFDKANALSAHLLIHRNIKLHHCEVCGLVFPDDQSLKEHAQIHSRQKLHACEKCDKKFPSSYRLFRHMTIHTENPPFVCDQCGVSVANKSDLKLHIMKHTGSAVYTCTECDKSFLKPSCLQRHSSVHTGERPLHCKTCNMTFTYSSNLCGHLIASSKAKPHPCTMCEKSFRRPSDLERHMMIHTGERPFVCQVCSMSFITNYNLKVHSMIHNGGLPYPCTSCDKAFSKPSELQRHKLVHSREKPFSCVKCEATFTNQSNLKAHMITHTGRKPFPCRICNKGFTRPSDVKRHMLTHTGCRPFACDVCGLAFADSSNLKKHSLTHSKDDQKLALQHQCPSCCISFFSYEQLNEHMISGNCTNNSGQADPKYSCKECGATFNHALHLQEHAIMHSNHRSVHRCDVCNKTFIQESFLIAHKASHTESRPHRCDICLKRFKSTSHLKNHVMIHSGVKPFECTVCNKSFLKLASLRRHFATHDRINFSSAVCHQCGKSFLNQEYLKKHSVVHADT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00418464;
90% Identity
iTF_01167894;
80% Identity
-