Cced001705.1
Basic Information
- Insect
- Cinara cedri
- Gene Symbol
- -
- Assembly
- GCA_902439185.1
- Location
- CABPRJ010000953.1:599816-607229[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00011 0.0087 16.6 0.5 2 23 139 160 138 160 0.96 2 19 0.0017 0.13 12.9 0.1 1 23 170 192 170 192 0.93 3 19 0.00041 0.032 14.8 0.8 1 23 198 220 198 220 0.96 4 19 4.1e-05 0.0033 17.9 4.5 1 23 226 248 226 248 0.97 5 19 1.2e-05 0.00095 19.6 0.1 1 23 254 276 254 276 0.98 6 19 0.00027 0.021 15.4 2.9 1 23 282 304 282 304 0.97 7 19 0.0011 0.086 13.5 1.8 2 20 311 329 310 331 0.93 8 19 8.4e-09 6.6e-07 29.6 1.0 1 23 338 360 338 360 0.97 9 19 2.1e-05 0.0017 18.9 0.4 1 23 366 388 366 388 0.97 10 19 9.1e-07 7.1e-05 23.2 0.4 1 23 394 416 394 416 0.97 11 19 2.8e-07 2.2e-05 24.8 0.6 1 23 422 444 422 444 0.98 12 19 1.6e-07 1.2e-05 25.5 0.5 1 23 450 472 450 472 0.98 13 19 1.5e-06 0.00012 22.5 0.1 1 23 478 500 478 500 0.97 14 19 0.16 12 6.7 1.6 1 21 511 531 511 532 0.94 15 19 7.1e-05 0.0056 17.2 1.2 1 23 546 568 546 568 0.97 16 19 4.5e-05 0.0035 17.8 1.1 1 23 575 597 575 597 0.96 17 19 6.7e-05 0.0053 17.3 4.9 1 23 603 625 603 625 0.97 18 19 0.00036 0.028 15.0 1.0 1 23 631 653 631 653 0.98 19 19 0.00055 0.043 14.4 1.6 2 23 662 683 662 683 0.92
Sequence Information
- Coding Sequence
- ATGAACGGTGTTGAAATTGTATTAACAGAAAAATCAGGAGAAAAACGTCTAGTAGCTGTTCAAGGAGGAACTGTTGAAAATACAGATGATCGACGAGGTCATGAAAATATTGGATATGGAATATTTGTTCAAGGATTAAATGGAGATTTAGCACATTTGTTGTTGGATCAAGAGGAAGTGGGGACTATGACTGTAGAAAGTTTGGCTAAAATAATCAATGGTCAAGAAGCAATAAGTGTATCTGGACAAATCCAAATAAATAATATAAAAATTGAAAATGTGGACTTGGCTAACCATGATGGTACAACTGAAATATACATTGCTGATGAAAAGAATACAATTGCGATTGACATGGCTAATGAAGCTGTTGCAAACTGTCAGAGTCTTATGCGCCCTGACCCAATGGATGAGTTACAATGTCAAAAATGTGGTAAACGATTTGCAGATATTAATACTTTAAAATCGCATGAGGTAACTCATGAAGAGAATCAAAATATAGAATGTAAATTTCTGTGTACTGTTTGTGGAGAAAAATTTGACAAGGCGAATGCATTGAGTGCACATTTGGTTAATCACCGTAATATAAAATTACATCATTGTGAAGTCTGTGGATTAGTATTTTCTGATGACCAATCATTAAAAGAACATGCTCAAATACACTCTCGCCAAAAACTACACACATGTCAGAAGTGCGACAAGAAATTTCCTTCAAGTTATAGATTGTTTCGTCATATGACGATTCATACAGAAAATCCACCATTTGTTTGTGATCAATGCGGTGTTTCTGTGGCAAATAAGAGTGATTTAAAGCTTCATATTATGAAACATACTGGTAGCGCTGTGTATACATGTACTGAGTGTGACAAGAGCTTTCTAAAACCATCTTGTCTGCAACGGCATTCCAGTGTTCACACAGGAGAACGACCATTACACTGTAAAACTTGTAATATGACATTTTCTTATTCCAGTAATTTGTGTGGACACTTGATAGCTAATTCTAAAGCAAAACCACATCCATGTACTATGTGTGATAAATCTTTTCGTCGCCCATCAGATTTAGAGCGCCACATGATGATTCATACAGGGGAACGTCCTTTTGTGTGTCAGGTTTGCTCGATGTCATTTATTACTAACTACAATTTGAAGGTACATTCAATGATCCACAATGGCGGTTTACCGTATCCTTGTACTTCATGTGACAAAGCTTTTAGCAAACCTTCAGAATTGCAGAGACACAAATTGGTACATTCAAGAGAAAAACCATTTTCGTGTGTCAAATGTGAAGCAACATTCACAAACCAGAGTAACCTTAAGGCTCATATGATAACCCATACAGGACGAAAACCATTTCCTTGTCGTATTTGTAATAAAGGATTTACTCGTCCGTCGGATGTTAAACGACATATGCTTACTCATACTGGTTGCCGTCCATTCGCATGTGATGTATGTGGTTTAGCTTTTGCTGATTCTTCAAATTTGAAAAAACACTCTTTGACCCATTCTAAAGATGATCAAAAACTCGCTTTGCAACATCAATGTCCTTCATGCTGTATATCATTTTTCTCATATGAGCAACTCAACGAACATATGATCTCTGGAAATTGTACTAATAATAGTGGCCAGGCTGAACCTAAGTATTCATGTAAAGAATGTGGCGCTACATTTAATCACGCATTACACTTGCAGGAGCATGCCATCATGCATTCCAATCATCGATCTGTGCATAGATGTGACGTATGTAACAAAACATTTATTCAAGAATCTTTTTTAATTGCACATAAGGCTTCTCATACTGAGTCACGCCCTCATCGTTGTGATATCTGTTTGAAGAGATTTAAAAGTACATCCCATTTGAAGAATCATGTAATGATACATTCAGGCGTTAAGCCATTTGAATGTACAGTATGCAGCAAGTCATTTTTAAAATTAGCCTCGTTGAGACGCCATTATGCAACACACGACCGTGTAAATTTTTCATCAGCTGTCTGCCATCAATGTGGCAAATCTTTTCTCAATCAAGAATATTTGAAGAAACATAGTGTAGTACATGCAGACACATAA
- Protein Sequence
- MNGVEIVLTEKSGEKRLVAVQGGTVENTDDRRGHENIGYGIFVQGLNGDLAHLLLDQEEVGTMTVESLAKIINGQEAISVSGQIQINNIKIENVDLANHDGTTEIYIADEKNTIAIDMANEAVANCQSLMRPDPMDELQCQKCGKRFADINTLKSHEVTHEENQNIECKFLCTVCGEKFDKANALSAHLVNHRNIKLHHCEVCGLVFSDDQSLKEHAQIHSRQKLHTCQKCDKKFPSSYRLFRHMTIHTENPPFVCDQCGVSVANKSDLKLHIMKHTGSAVYTCTECDKSFLKPSCLQRHSSVHTGERPLHCKTCNMTFSYSSNLCGHLIANSKAKPHPCTMCDKSFRRPSDLERHMMIHTGERPFVCQVCSMSFITNYNLKVHSMIHNGGLPYPCTSCDKAFSKPSELQRHKLVHSREKPFSCVKCEATFTNQSNLKAHMITHTGRKPFPCRICNKGFTRPSDVKRHMLTHTGCRPFACDVCGLAFADSSNLKKHSLTHSKDDQKLALQHQCPSCCISFFSYEQLNEHMISGNCTNNSGQAEPKYSCKECGATFNHALHLQEHAIMHSNHRSVHRCDVCNKTFIQESFLIAHKASHTESRPHRCDICLKRFKSTSHLKNHVMIHSGVKPFECTVCSKSFLKLASLRRHYATHDRVNFSSAVCHQCGKSFLNQEYLKKHSVVHADT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418464;
- 90% Identity
- iTF_01167894;
- 80% Identity
- -