Cova012425.1
Basic Information
- Insect
- Chaetogeoica ovagalla
- Gene Symbol
- -
- Assembly
- GCA_032441825.1
- Location
- CM063736.1:7571370-7574020[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.8e-05 0.01 16.6 0.5 2 23 140 161 139 161 0.96 2 19 0.00095 0.097 13.5 0.1 1 23 172 194 172 194 0.94 3 19 0.00075 0.077 13.8 0.5 1 23 200 222 200 222 0.96 4 19 3.7e-05 0.0038 17.9 4.5 1 23 228 250 228 250 0.97 5 19 8.1e-06 0.00083 20.0 0.1 1 23 256 278 256 278 0.98 6 19 0.00024 0.025 15.4 2.9 1 23 284 306 284 306 0.97 7 19 0.0017 0.18 12.7 1.5 2 21 313 332 312 333 0.93 8 19 8.9e-08 9.2e-06 26.2 2.8 1 23 340 362 340 362 0.97 9 19 4.3e-05 0.0044 17.7 0.2 1 23 368 390 368 390 0.97 10 19 8e-07 8.3e-05 23.2 0.4 1 23 396 418 396 418 0.97 11 19 7e-08 7.2e-06 26.5 0.6 1 23 424 446 424 446 0.98 12 19 1.4e-07 1.4e-05 25.5 0.5 1 23 452 474 452 474 0.98 13 19 1.3e-06 0.00014 22.5 0.1 1 23 480 502 480 502 0.97 14 19 0.81 83 4.3 2.7 1 21 513 533 513 534 0.94 15 19 6.3e-05 0.0065 17.2 1.2 1 23 548 570 548 570 0.97 16 19 0.00016 0.017 15.9 2.1 1 23 577 599 577 599 0.96 17 19 5.9e-05 0.0061 17.3 4.9 1 23 605 627 605 627 0.97 18 19 0.00022 0.023 15.5 1.1 1 23 633 655 633 655 0.97 19 19 0.00049 0.05 14.4 1.6 2 23 664 685 664 685 0.92
Sequence Information
- Coding Sequence
- aTGAACGGCGGTGTAGAAATTGTGGTAACAGAAAAATCTGGTGAGAAACGTTTGGTCACTGTCCAAGGAGCAACTGTTGAAACTACAGATGAtcgacgGGTTCATGAAAATATTGGATATGGAATATTTGTACAAGGTTTAAATGGGgattTAGCCCATTTATTATTGGATCAGGAAGAGGTAGGAACCATGACAGTGGAAAATTtagcaaaaataattaatggccAGGAAACAATAAGTGTATCAGgacaaattcaaataaataatttaaaaattgaaaatgtggATTTATCTCATCAACAAGGTACAACAGAAATTTACATTGATAATGATAAGACTACAATTGAAATCGACATGGCCAATGAAGCTGTTGCAAACTGTCAGAGTCTTATGCGACCCGATCCAATGGACGAATTACAGTGTCAAAAATGTGGCAAACGATTTGCAGACATAAACACACTGAAATCTCACGAAGTGACTCATAATGATAATCAACACGATGTggaatgtaaatttttatgtactGTTTGTGGACAAAAATTTGATAAGGCAAATGCGTTGAGTGCGCATTTAGTCGTTCACCGTAATGTCAAGGTGCATCATTGTGATATTTGTGGATTAGTATTTCCTGATGATCAAACCTTAAAAGAACATGCTCAGATACACAATCGTCAGAAAGTACACACTTGCCaaaagTGTGATAAGAAATTCCCTTCGAGTTACAGATTATTTCGTCATATGACGATTCATACAGAAAACCCTCCATACGTCTGTGATCAATGTGGCGTTTCTGTGGCAAATAAGAGCGATTTAAAGCTTCATATCATGAAACATACCGGTAGTGCTGTATATACATGTACAGAATGTGATAAGAGTTTCTTAAAGCCATCGTGTTTGCAACGTCACTCAAGTGTACATACTGGTGAACGACCATTGCATTGTAAAACTTGTAACATGACCTTCGCGTATAACAGTAATCTTTGTGGCCATTTAATGGCTAGTTCTAAAGCGAAGCCACATCCCTGTTGTATGTGTGATAAATCCTTCAGACGTCCATCCGATTTAGAACGCCATATGATGATCCATACAGGTGAACGTCCGTTTGTGTGTCAAATTTGTGCAATGTCATTTATTACCAACTACAATTTAAAGGTACATTCAATGATTCACAATGGAGGTTTGCCATATCCATGCACGTCATGCGATAAAGCGTTTAGCAAACCTTCGGAATTACAGAGACACAAGTTGGTACATTCGAGAGAGAAACCGTTTTCGTGTGTCAAGTGTGATGCAACATTTACTAATCAAAGTAATCTCAAAGCCCATATGATAACGCATACTGGTAGAAAACCATTCCCTTGTCGCATTTGTAACAAAGGGTTTACACGACCTTCAGACGTCAAACGCCATATGCTTACTCATACTGGCTGTCGTCCGTTTGCGTGTGATGTATGTGGCTTGGCCTTTGCAGACTCGTccaatttgaaaaaacactCATTGACCCACTCTAAAGAAGATCAAAAACTAGCTTTGCAACATCAGTGTTCATCATGTTGCTTGTCCTTTTTCTCGTACGAGCAGCTCAATGAACATATGATCTCCGGAAATTGTACCAACAATGGCAATCAAGTTGAACCCAAGTATTCGTGTAAGGAATGCGGTGCCACGTTCAATCATGCGCTACACTTACAGGAGCATGCTATCATGCATTCCAACCATCGTTCCGTCCACAGGTGTGATGTGTGTAATAAGACTTTTATACAAGAATCTTTTTTGCTTACTCATAAGGCTTCTCATACAGAATTACGTCCACACCGTTGTGATATATGTTTGAAGAGGTTCAAGAGCACGTCTCATCTAAAGAACCATGTGATGATACATTCAGGCGTTAAACCATTCGAGTGTACcatttgtaataaatcatttttaaaattggcCTCGCTTAGACGTCATTTCGCTACACACGATCGTATGAACTTTTCTTCAGCTGTCTGCCACCAATGTGGCAAATCTTTTCTCAACCAGGAATACTTGAAAAAGCACAGTGTAGTACATGCTGATGCGTAA
- Protein Sequence
- MNGGVEIVVTEKSGEKRLVTVQGATVETTDDRRVHENIGYGIFVQGLNGDLAHLLLDQEEVGTMTVENLAKIINGQETISVSGQIQINNLKIENVDLSHQQGTTEIYIDNDKTTIEIDMANEAVANCQSLMRPDPMDELQCQKCGKRFADINTLKSHEVTHNDNQHDVECKFLCTVCGQKFDKANALSAHLVVHRNVKVHHCDICGLVFPDDQTLKEHAQIHNRQKVHTCQKCDKKFPSSYRLFRHMTIHTENPPYVCDQCGVSVANKSDLKLHIMKHTGSAVYTCTECDKSFLKPSCLQRHSSVHTGERPLHCKTCNMTFAYNSNLCGHLMASSKAKPHPCCMCDKSFRRPSDLERHMMIHTGERPFVCQICAMSFITNYNLKVHSMIHNGGLPYPCTSCDKAFSKPSELQRHKLVHSREKPFSCVKCDATFTNQSNLKAHMITHTGRKPFPCRICNKGFTRPSDVKRHMLTHTGCRPFACDVCGLAFADSSNLKKHSLTHSKEDQKLALQHQCSSCCLSFFSYEQLNEHMISGNCTNNGNQVEPKYSCKECGATFNHALHLQEHAIMHSNHRSVHRCDVCNKTFIQESFLLTHKASHTELRPHRCDICLKRFKSTSHLKNHVMIHSGVKPFECTICNKSFLKLASLRRHFATHDRMNFSSAVCHQCGKSFLNQEYLKKHSVVHADA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418464;
- 90% Identity
- iTF_01167894;
- 80% Identity
- -