Basic Information

Insect: Paracoccus marginatus
Gene Symbol: L
Assembly: GCA_900065295.1
Location: FIZT01022867.1:1-8020[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.00011 0.0089 16.7 0.2 1 23 16 38 16 38 0.98

2 21 7.3e-06 0.00058 20.4 1.5 2 23 55 76 54 76 0.97

3 21 0.64 51 4.8 0.1 2 23 99 122 98 122 0.88

4 21 0.0009 0.072 13.8 0.7 1 23 167 190 167 190 0.93

5 21 0.0017 0.13 13.0 0.5 1 23 303 325 303 325 0.95

6 21 0.0011 0.091 13.5 1.4 1 23 349 371 349 371 0.98

7 21 7.4e-05 0.0059 17.2 0.3 1 23 379 402 379 402 0.95

8 21 0.0067 0.54 11.1 0.8 1 23 407 430 407 430 0.93

9 21 5.4 4.3e+02 1.9 0.5 1 23 437 464 437 464 0.63

10 21 0.014 1.1 10.1 0.8 2 23 484 505 483 505 0.97

11 21 0.0044 0.35 11.6 1.4 1 23 509 532 509 532 0.97

12 21 0.61 49 4.9 1.1 3 23 661 683 659 683 0.90

13 21 0.00013 0.01 16.5 2.9 2 23 696 717 695 717 0.96

14 21 0.52 41 5.1 0.4 1 23 727 749 727 749 0.95

15 21 1.2 94 4.0 2.5 2 23 757 778 756 778 0.96

16 21 0.0059 0.47 11.3 0.3 1 23 862 885 862 885 0.96

17 21 0.24 19 6.2 0.8 1 23 889 911 889 911 0.96

18 21 0.073 5.8 7.8 0.1 1 23 920 942 920 942 0.96

19 21 0.002 0.16 12.7 0.3 1 23 950 972 950 972 0.97

20 21 0.51 40 5.2 4.6 1 23 979 1001 979 1001 0.94

21 21 0.0021 0.17 12.6 4.1 1 23 1054 1077 1054 1077 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.00011	0.0089	16.7	0.2	1	23	16	38	16	38	0.98
2	21	7.3e-06	0.00058	20.4	1.5	2	23	55	76	54	76	0.97
3	21	0.64	51	4.8	0.1	2	23	99	122	98	122	0.88
4	21	0.0009	0.072	13.8	0.7	1	23	167	190	167	190	0.93
5	21	0.0017	0.13	13.0	0.5	1	23	303	325	303	325	0.95
6	21	0.0011	0.091	13.5	1.4	1	23	349	371	349	371	0.98
7	21	7.4e-05	0.0059	17.2	0.3	1	23	379	402	379	402	0.95
8	21	0.0067	0.54	11.1	0.8	1	23	407	430	407	430	0.93
9	21	5.4	4.3e+02	1.9	0.5	1	23	437	464	437	464	0.63
10	21	0.014	1.1	10.1	0.8	2	23	484	505	483	505	0.97
11	21	0.0044	0.35	11.6	1.4	1	23	509	532	509	532	0.97
12	21	0.61	49	4.9	1.1	3	23	661	683	659	683	0.90
13	21	0.00013	0.01	16.5	2.9	2	23	696	717	695	717	0.96
14	21	0.52	41	5.1	0.4	1	23	727	749	727	749	0.95
15	21	1.2	94	4.0	2.5	2	23	757	778	756	778	0.96
16	21	0.0059	0.47	11.3	0.3	1	23	862	885	862	885	0.96
17	21	0.24	19	6.2	0.8	1	23	889	911	889	911	0.96
18	21	0.073	5.8	7.8	0.1	1	23	920	942	920	942	0.96
19	21	0.002	0.16	12.7	0.3	1	23	950	972	950	972	0.97
20	21	0.51	40	5.2	4.6	1	23	979	1001	979	1001	0.94
21	21	0.0021	0.17	12.6	4.1	1	23	1054	1077	1054	1077	0.97

Sequence Information

Coding Sequence: GATCATCTGAAGATCCATTTGAAAACCCACGACAATCGAAAGCCGTTCCAATGCACGTTATGCAACCGAGGCTACGGTACGGCGGCAGCGCTCACGTCGCATATGCAAAATCACAAAAGATCGAACGAGATTTCATCTCAGCCTACACCCGTCGGCAGCATAAAATGTCACAAATGCTCGGAAACGTTTCGAGAACCGGAAGAATTGCAAAATCACATGAACATGCATCAGTCGCCGGAAAACGTACACAACTCGAATAGTAAATCGTCCAAGAACTCGTATCCGGCCATTTTAGTATGCCCTTATTGCCGTAAGGATAATTTCTCGACGATGGACGCTCTACAGATGCACGTTCAATCGGCCCACAAATCGATTTTCAACGGAGACTTACAACGCGAGATCTCAAACTTGAAGCTGAAATCTCCAGCTCCGACGGCCAGCCAGTTAAATTCGTCTTCGCCTTTAAACGTAACGCAGTCTTTCAATTCTCTACCGTCCTACTATTGCGACCAGTGCACCATGAAGTTCTCGTCGCTGCAAGCCCTGCAGAAGCACACGAGCGCCGTTCACGGCTTCTCGAGCACCGCCTACAATAACCTCAAGTACTTGATGTCGTCGCCGGAGATGTACAACAATGGCAAATTGTACTGCATGTATTGCGCGATGCAGTTCCTGACGCCGGCGGCTTACGCGGAGCATTACATCATCTTCCATAGTCCGTACCATCCTCAGCTGATGGGGCTGACTCCGCCGGAACAAATGAAACCGActgatttatcgaaaaagaCGTCTCCGGTTAAACGCTCCAACATGGACGAGCACCGGTCGTCGCCTCGTAAGAAgaataaaatgaacgaaaattccattttgaacTCCAACAACCATCGGTACGGTTATCCGGGTCCGTTTCTGTGCAATCAATGCAGCGCCGCATTTACCGATTTCGAATCGTTCCGGGCTCATATTAAATTACACATCGAAGAAACCAGCGGAGGGCTGTTAGGTGGTGCTTCGCCGATGGAGCGTAAACGTACCTCGGCCGAATTCACGTGTCCTCATTGCCGATCGACGTTCTCGTCTAATGAGGAGATAAGTCAACACATCGTCACGCATTTCCTATCCTCCGGCCTCGAATACAGCTGCGAAAATTGCCAGAAATCGTACGAGAAAGCGGAAGACCTGCAGAAGCATTTGATGGATGTGCATGCTCATCATTTGTACAGCTGCTCGATTTGTAACGAagttttcgattcgaaaaatacgaTCCAGCTTCATTTCACCATGAGACATAGTAACGAAGCCAAAGTGTACCGATGTACTGGATGTTCAACTTCGTCCAGTATTGCCTTTCATTCAGAACTCGAATTTGCCAATCATGTGAAAACAGTGCATGCCAGTAATTCTCCGTTGTTGGCTCCTTTTGCCACTCATCATAATGCTCAAATGCAGAGGTGCTTCATTTGCCACATGAGTTTTCCAACCGAATTGGAGATGCAGTTACATTTGGCGACGCATGGTAAACAATTCCAATGTACGTTGTGTCCGCAATCGTTCCACATCGAGTATTTACTCGATAAACATATGCAGAACGATCACAGTTCACCGCAAATCAACGGATCGTACGAAAACTGTCTGGACTCCGGCAACAAAGAATCTTCGCCCATTCTCTCACCCAACAATCGTTTCGACAATCAGATAAAAAAGAACGACAATTCCGAACCGAAAAGCAACTTCATCTGCTGtgatatttgtgaaaaatgcgatttctCCTCTGAAAACGAACTCGTCAGCCACAAAAAACTATTCCATCATAAATTGTTGTCTCCCGTCAAGCACGAAAGTTCTGAAAATTCCGAAGATAGAATGAAACTGTCTCAAAAACACAAATcgaattcttcttcttcttcgcctACAATTCGATGCGAgagcaaaaaaatggaatcttTTAATGGCGACTCGAACGGGAATAATTTGACATGTTgcgaaatttgcgaaaaacgaGATTTCGCTAGCGAATCTGAACTAATGTCGCATAAGAAGCTGATTCATAATGTAAAACTATCGCCTCATGGAAAGgtAAGCTTGAATTGCGCATACTGCAAAGAAAACTGCAAATCGAGATCGGACTTGGAAAACCACATGAAAACTCATTCTCAAAACTCTACATCTTCTGGAAAACACAAATGTATAATCTGTGATGAAATGTGTCCAACGGCCGCTGTCCTAGCTGAACATAAACTCACTCATTGCAAGGTTCTGTCGGGAAAAACCTGCATGCACTGTAAAGGCTCCATTACAACCGAAGAGCAATTCTTTTCCCACATTCAGCAACACAGCTCACCGCAAAACGGAACCAACAACAATAACAGCTCATCCCAAAACTCTCTAGTTTTGCCGACGTTCTGCGTAATCTGCCGGCAAACCTTATCATCTGAGATGGAGGCCCGAATGCACGCCAGATTCCACCTACACCAATCGGCCGACTTGGTACCGTGCTCTGTATGCTTTCATATGTCCGAGAGGCAGGATTTGATCGCCGGAATCTGCAAAGAGTGTTATCAAAGACACGGTAAATCGTCACCTTTCCGGTGTCCGGAATGCCACATGAAGTTCGACAACGGTACATCCATTGAAATACATTTGGCCACGGTGCACAGAAAAAGTTACCAGTGTATCAAATGCCAAGTGAGCTTCGataacgaaaaagaaatccaaCACCACGTCGCATCGCACGTAATGATGGACGGACTAAACGGTCACGAATGTCGACTCTGCAGATTAGTGCTGCCTTCACCCGTTCAACTGCAGACACACCTTATCGAGCATACATTCGCCGGCTGCGCTACGTTCACTTGTTATTTGTGCAGTTCTGTGTTTACTACAGCTCAAGGCCTGCAAACGCACATTCTAGAGCACGGCTTAGCAGCTAGGCCTTACGATTGTTCGAGATGTAAACAAAAGTTCTTCTTTACTTCGGAGCTAGAACACCACAGCTTCGTGCATTTGGAGGAGTTAGCCTTAAGCGAAGGTCACGGATACTTTTACGGGCAAGATAAAAACTTACTGAAAGATAAATCCGCTGCGAATAATCCGTACATCAATCATTCCATCTCGTTAGCCGAGAATCTCTACAACAATAACAAAGAACCGAGCAATAAATACCACTGCACCGAATGCGGTACCGATTTCTCTCACGCCAATGATCTCTACGATCACAAAAATCGTTTCCATAACTCAGCTCAGACCGAAAGATACGTTCAAAATGGCGAACACAAGCGTCCCAAAAGGGAAACTCCCAACCCTACCGATGGCAACAGAGTCAAGTATGAAGAGCAAAATGACAACGCAGAcgtagatgaaaaaattgacgccaAACAGACCGATTGCGAATCGGAAGACGAACAGATCGACGTTGTTACTACCAAGACCGAAGAACCGACcgaaaatgctgaaaaaaatgacaaataa
Protein Sequence: DHLKIHLKTHDNRKPFQCTLCNRGYGTAAALTSHMQNHKRSNEISSQPTPVGSIKCHKCSETFREPEELQNHMNMHQSPENVHNSNSKSSKNSYPAILVCPYCRKDNFSTMDALQMHVQSAHKSIFNGDLQREISNLKLKSPAPTASQLNSSSPLNVTQSFNSLPSYYCDQCTMKFSSLQALQKHTSAVHGFSSTAYNNLKYLMSSPEMYNNGKLYCMYCAMQFLTPAAYAEHYIIFHSPYHPQLMGLTPPEQMKPTDLSKKTSPVKRSNMDEHRSSPRKKNKMNENSILNSNNHRYGYPGPFLCNQCSAAFTDFESFRAHIKLHIEETSGGLLGGASPMERKRTSAEFTCPHCRSTFSSNEEISQHIVTHFLSSGLEYSCENCQKSYEKAEDLQKHLMDVHAHHLYSCSICNEVFDSKNTIQLHFTMRHSNEAKVYRCTGCSTSSSIAFHSELEFANHVKTVHASNSPLLAPFATHHNAQMQRCFICHMSFPTELEMQLHLATHGKQFQCTLCPQSFHIEYLLDKHMQNDHSSPQINGSYENCLDSGNKESSPILSPNNRFDNQIKKNDNSEPKSNFICCDICEKCDFSSENELVSHKKLFHHKLLSPVKHESSENSEDRMKLSQKHKSNSSSSSPTIRCESKKMESFNGDSNGNNLTCCEICEKRDFASESELMSHKKLIHNVKLSPHGKVSLNCAYCKENCKSRSDLENHMKTHSQNSTSSGKHKCIICDEMCPTAAVLAEHKLTHCKVLSGKTCMHCKGSITTEEQFFSHIQQHSSPQNGTNNNNSSSQNSLVLPTFCVICRQTLSSEMEARMHARFHLHQSADLVPCSVCFHMSERQDLIAGICKECYQRHGKSSPFRCPECHMKFDNGTSIEIHLATVHRKSYQCIKCQVSFDNEKEIQHHVASHVMMDGLNGHECRLCRLVLPSPVQLQTHLIEHTFAGCATFTCYLCSSVFTTAQGLQTHILEHGLAARPYDCSRCKQKFFFTSELEHHSFVHLEELALSEGHGYFYGQDKNLLKDKSAANNPYINHSISLAENLYNNNKEPSNKYHCTECGTDFSHANDLYDHKNRFHNSAQTERYVQNGEHKRPKRETPNPTDGNRVKYEEQNDNADVDEKIDAKQTDCESEDEQIDVVTTKTEEPTENAEKNDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01472666; iTF_01263835; iTF_01262794; iTF_00725758; iTF_00194623;
90% Identity: iTF_01472666; iTF_01262794; iTF_01263835; iTF_00725758; iTF_00194623;
80% Identity: -