Plon010092.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- L
- Assembly
- GCA_900064475.1
- Location
- FIZU01015323.1:29506-41282[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.016 1.5 9.8 5.5 1 23 10 32 10 32 0.98 2 24 5e-06 0.00048 20.8 2.6 1 23 38 60 38 60 0.99 3 24 0.00011 0.01 16.6 0.2 1 23 66 88 66 88 0.98 4 24 7.1e-06 0.00068 20.3 1.5 2 23 105 126 104 126 0.97 5 24 0.55 52 5.0 0.1 3 23 150 172 148 172 0.88 6 24 0.00046 0.044 14.6 0.8 1 23 217 240 217 240 0.95 7 24 0.0016 0.16 12.9 0.5 1 23 354 376 354 376 0.95 8 24 0.001 0.096 13.6 0.8 1 23 400 422 400 422 0.98 9 24 0.00038 0.036 14.9 0.3 1 23 430 453 430 453 0.96 10 24 0.0074 0.7 10.8 0.2 1 23 458 481 458 481 0.92 11 24 4.8 4.5e+02 2.0 0.8 1 23 488 514 488 514 0.90 12 24 0.014 1.3 10.0 0.8 2 23 534 555 533 555 0.97 13 24 0.0043 0.41 11.6 1.4 1 23 559 582 559 582 0.97 14 24 1.3 1.3e+02 3.7 0.7 3 23 711 733 709 733 0.89 15 24 0.00012 0.012 16.4 2.9 2 23 746 767 745 767 0.96 16 24 0.51 48 5.1 0.4 1 23 777 799 777 799 0.95 17 24 1.2 1.2e+02 3.9 1.0 2 23 807 828 806 828 0.96 18 24 10 9.5e+02 1.0 0.4 3 23 851 871 849 871 0.93 19 24 0.0086 0.82 10.6 0.2 1 23 911 934 911 934 0.96 20 24 0.24 22 6.1 0.8 1 23 938 960 938 960 0.96 21 24 0.21 20 6.3 0.1 1 23 969 991 969 991 0.95 22 24 0.002 0.19 12.6 0.3 1 23 999 1021 999 1021 0.97 23 24 0.5 47 5.1 4.6 1 23 1028 1050 1028 1050 0.94 24 24 0.0035 0.34 11.9 3.1 1 23 1102 1125 1102 1125 0.97
Sequence Information
- Coding Sequence
- ATGCGGACTCATACGGATTGTATGCCTTTTCAATGTCAGTATTGTAATACGTTATTTAAACATAAACGAAGTCGGGATCGtcatataaaaatacataccGGAGAAAAGAAGTATAAATGCTCGAAATGTGATGCTGGATATACCAGAAGCGATCACCTTAAAATCCACCTGAAAACGCACGACAATCGAAAACCATTCCAATGTACTCTGTGCAATCGAGGCTATGGCACAGCGGCTGCGCTGACGTCGCATATGCAGAATCACAAACGATCAAATGAAATCTCATCTCAACCAACGCCTGCTGGTAGCATAAAATGCCACAAATGCTCGGAAACGTTCCGAGAACCGGAAGAATTACAAAATCACATGAACATGCATCAGTCACCTGAAAACGTCCACAATTCGAACAACAAatcgtccaaaaattcatacccAGCCATTCTGATATGTCCTTATTGTCGAAAAGATAATTTCTCAACGATGGATGCTCTACAATCGCACGTTCAATCAGCCCACAAATCCATTTTCAACGGAGACTTACAAAGAGAGATCTCGAACCTGAAACTCAAGTCGCCGGCGCCAACTCCAACTCAGCTAAATTCCTCATCGCCTTTAAACGTAACTCAGTCTTTCAATTCATTACCGTCCTACTATTGCGATCAATgcacgatgaaattttcatcgctgcAGGCTCTCCAAAAACATACCAATGCCGTTCACGGGTTCTCCAACACCACCTACAATAACCTCAAGTACTTGATGTCGTCGCCTGAGATGTACAACAACGGCAAATTGTACTGCATGTATTGCGCGATGCAGTTCCTGACTCCTGCTGCTTACGCCGAGCACTACATCATCTTCCATAGCCCTTATCATCCTCAGCTGATGGGCTTAACACCGCCTGAACAAATGAAACCGACTGATTTATCCAAAAAGACGTCACCCGTTAAACGTTCCAATATCGACGAGCATCGATCATCTCCTCGTAGCAAGAAGAATAAAGTTAATGAAAACTCCATTTTGAATTCGAATAACCATCGTTACGGTTATCCGGGCCCGTTTCTGTGCAATCAATGTAGCGCCGCGTTCACCGATTTCGAATCGTTCCGGGCTCATATTAAATTACATATCGAAGAAACCAGCGGAGGTTTATTAGGCGGCGCTTCTCCTATGGAGCGTAAACGTACATCGGCTGAATTCACGTGTCCTCATTGTCGATCGGTATTCTCATCTAGTGAAGAGATCAGCCAACATATTGTGACGCATTTTCTAGCTTCGAGTGTCGAATACAGCTGCGAAAATTGCCAGAAATCTTACGACAAAGGTGACGATTTGCAGAAGCATTTGATGGAAGTGCATGCCCATCATTTGTACAGTTGCTCAATTTGTAACGAAGTATTTGATTCGAAGATGGCTATTCAGGTTCATTTCACCATCAGACATAGCAACGAGGCGAAGGTGTATCGATGCACTGGATGCTCGTCGTCCAGCATCGTCTTCCATTCGGAACTCGAGTTCGCCAATCATGTCAAAACTATGCATACCAATAATTCTCCTTTGTTGACTGCGTTTGCTACCCATCATAATGCTCAAATGCAGAGATGCTTCATTTGTCATATGAGTTTTCCGACCGAattagagatgcagctacaTTTAGCGACCCATGGTAAACAGTTCCAATGTACCTTGTGCCCTCAATCGTTTCATATCGAGTATTTACTGGATAAACACATGCAGAATGATCATAGTACACCGCAAATCAATGGATCATACGATAATTGTTTGGATTCCTCCAACAAAGAATCATCACCCATTCTTTCGCCCAACAATCGTTTCGACAATCAGATTAAGAAGAATGATAATTCTGAAACGAAAAGCAACTTCATCTGCTGTGATATCtgtgaaaaatgtgaattcaCCAGCGAAAACGAACTGCTCAGTCATAAAAAACTATTCCACCACAAATTGCTATCTCCTGTCAAAcatgaaaattcagaaaattcagAAGACCGAAtgaaattatctcaaaaacatAAATCCAATTCTTCATCGTCTTCTCCTACGATTCGGTGCGATAAcaagaaaattgaatcgtTTAATGGCGATTCAAATGGAAGTAATTTGACCTGTTGTGAGATATGTGAAAAACGCGATTTCGCCAACGAAGCTGAACTAATGtcacataaaaaattgatacataaCGTGAAACTATCTCCTCATGGAAAGGTAAGCTTAAATTGCGCCTACTGTAAAGAAAACTGTAAATCAAGATCGGACCTGGAAAACCATATGAAAACCCATTCTCAAAACTCAACTTCGTCTGGTAAACACAAATGTATAATCTGTGATGAAATGTGTCCAACAGCTGCCGTCTTAGCCGAACACAAGCTTACTCACTGCAAGGTTTTATCAGGAAAAACATGCATGCAATGTAAAGGCTCGATTACAACCGAAGAGCAATTCTTCTCGCACATTCAACAACACAGCTCGCCCCAAAATGGAACTAACAACAATAACTCATCTCAAAATTCACTAGTTTTACCAACATTCTGCGTAATTTGTCGACAAACCTTATCTTCTGAGATGGAAGCTCGAATGCATGCAAGATTCCACTTGCACCAATCAGCTGATTTGGTACCATGTTCTGTATGCTTCCATATGTCTGAAAGGCAAGATTTGATCGCTGGGATATGTAAGGATTGCTATCAAAGGCATGGAAAATCATCGCCATTTCGATGTCCCGAATGTCACATGAAATTCGATAACGGTACAGCGATTGAAATTCATTTGGCAACGGTGCATAGGAAAAGTTACCAGTGTATCAAATGCCAAgTGAGCTTCGATaacgaaaaagaaatccaACACCATGTCGCCTCTCACGTAATGATCGATGGACTAAATGGTCACGAATGTCGATTATGTCGATTAGTATTGCCTTCTCCACTACAACTACAAGCTCATCTCATCGAGCACACATTCGCTGGCTGCGCTACGTTCACATGCTATTTATGTAGTTCTGTATTCACAACTGCTCAAGGCTTGCAAACTCATATTCTAGAGCATGGTTTAGCAGCTAGACCTTACGATTGCTCGAGATGCAAACAGAAATTCTTCTTTACTTCGGAACTAGAACATCATAGCTTCGTACATTTAGAAGAATTAGCTCTAAGCGAAGGTCACGGATATTTCTATGgtcaagataaaaatctgcTGAAAGATAAATCCGCAAACATTCCATACATAAACCATTCAATTACGCTGGCCGAGAATTTATACAACAATAACAAAGAACCGAGCAATAAATACCATTGTACCGAATGTGGTACCGATTTCCCCCACGCCAACGATCTATACGATCACAAGAATCGTTTCCACAATACACAAAGCGAAAGGTACGTTCAAAACGGCGAACACAAACGTAAAAGAGACACTCCAAATCCTTCCGATGGCAATAGAGTCAAGTATGAAGAGCAAAATGACAATGTAGTTGAAGTAGAAGAAAAACCCGAAACCAAACAGAATGATTGCGAATCAGAAGACGAACAGATCGATGTAGTTACTACCAAGACTGAAGATCAAccggaaaatgttgaaaataatgacaaataa
- Protein Sequence
- MRTHTDCMPFQCQYCNTLFKHKRSRDRHIKIHTGEKKYKCSKCDAGYTRSDHLKIHLKTHDNRKPFQCTLCNRGYGTAAALTSHMQNHKRSNEISSQPTPAGSIKCHKCSETFREPEELQNHMNMHQSPENVHNSNNKSSKNSYPAILICPYCRKDNFSTMDALQSHVQSAHKSIFNGDLQREISNLKLKSPAPTPTQLNSSSPLNVTQSFNSLPSYYCDQCTMKFSSLQALQKHTNAVHGFSNTTYNNLKYLMSSPEMYNNGKLYCMYCAMQFLTPAAYAEHYIIFHSPYHPQLMGLTPPEQMKPTDLSKKTSPVKRSNIDEHRSSPRSKKNKVNENSILNSNNHRYGYPGPFLCNQCSAAFTDFESFRAHIKLHIEETSGGLLGGASPMERKRTSAEFTCPHCRSVFSSSEEISQHIVTHFLASSVEYSCENCQKSYDKGDDLQKHLMEVHAHHLYSCSICNEVFDSKMAIQVHFTIRHSNEAKVYRCTGCSSSSIVFHSELEFANHVKTMHTNNSPLLTAFATHHNAQMQRCFICHMSFPTELEMQLHLATHGKQFQCTLCPQSFHIEYLLDKHMQNDHSTPQINGSYDNCLDSSNKESSPILSPNNRFDNQIKKNDNSETKSNFICCDICEKCEFTSENELLSHKKLFHHKLLSPVKHENSENSEDRMKLSQKHKSNSSSSSPTIRCDNKKIESFNGDSNGSNLTCCEICEKRDFANEAELMSHKKLIHNVKLSPHGKVSLNCAYCKENCKSRSDLENHMKTHSQNSTSSGKHKCIICDEMCPTAAVLAEHKLTHCKVLSGKTCMQCKGSITTEEQFFSHIQQHSSPQNGTNNNNSSQNSLVLPTFCVICRQTLSSEMEARMHARFHLHQSADLVPCSVCFHMSERQDLIAGICKDCYQRHGKSSPFRCPECHMKFDNGTAIEIHLATVHRKSYQCIKCQVSFDNEKEIQHHVASHVMIDGLNGHECRLCRLVLPSPLQLQAHLIEHTFAGCATFTCYLCSSVFTTAQGLQTHILEHGLAARPYDCSRCKQKFFFTSELEHHSFVHLEELALSEGHGYFYGQDKNLLKDKSANIPYINHSITLAENLYNNNKEPSNKYHCTECGTDFPHANDLYDHKNRFHNTQSERYVQNGEHKRKRDTPNPSDGNRVKYEEQNDNVVEVEEKPETKQNDCESEDEQIDVVTTKTEDQPENVENNDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150697;
- 90% Identity
- iTF_01150697;
- 80% Identity
- -