Pvib008711.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudococcus viburni
Gene Symbol
L
Assembly
GCA_033439095.1
Location
JAVBJF010000097.1:1045067-1102666[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 1.9e-05 0.0018 19.1 2.6 1 23 83 105 83 105 0.96
2 24 0.018 1.8 9.7 5.5 1 23 111 133 111 133 0.98
3 24 5.8e-06 0.00056 20.7 2.6 1 23 139 161 139 161 0.99
4 24 0.00013 0.012 16.5 0.2 1 23 167 189 167 189 0.98
5 24 1.9e-05 0.0019 19.0 1.4 2 23 206 227 205 227 0.97
6 24 0.64 61 4.8 0.2 3 23 251 273 249 273 0.88
7 24 0.00058 0.056 14.4 1.2 1 23 318 341 318 341 0.96
8 24 0.0019 0.18 12.8 0.5 1 23 455 477 455 477 0.95
9 24 0.0012 0.11 13.4 0.8 1 23 501 523 501 523 0.98
10 24 0.0014 0.14 13.2 1.0 1 23 531 554 531 554 0.94
11 24 0.014 1.4 10.0 0.3 1 23 559 582 559 582 0.91
12 24 8 7.7e+02 1.4 0.7 1 23 589 615 589 615 0.87
13 24 0.015 1.5 9.9 0.8 2 23 635 656 634 656 0.97
14 24 0.0049 0.47 11.5 1.4 1 23 660 683 660 683 0.97
15 24 0.98 94 4.2 1.1 3 23 812 834 810 834 0.90
16 24 0.00014 0.014 16.3 2.9 2 23 847 868 846 868 0.96
17 24 0.58 56 5.0 0.4 1 23 878 900 878 900 0.95
18 24 1.4 1.3e+02 3.7 1.0 2 23 908 929 907 929 0.96
19 24 0.0098 0.95 10.5 0.2 1 23 1012 1035 1012 1035 0.96
20 24 0.27 26 6.0 0.8 1 23 1039 1061 1039 1061 0.96
21 24 0.24 23 6.1 0.1 1 23 1070 1092 1070 1092 0.95
22 24 0.0023 0.22 12.5 0.3 1 23 1100 1122 1100 1122 0.97
23 24 0.57 55 5.0 4.6 1 23 1129 1151 1129 1151 0.94
24 24 0.004 0.39 11.7 3.1 1 23 1203 1226 1203 1226 0.97

Sequence Information

Coding Sequence
ATGCTACTAAAATCTCCGACAGCTTCATCTGAAGATTCGGCGGGAGCCCAAGTGGCTCTATTTATAAAGTTGTTAACATTGAACTGGCGGGTTATATTGGataCACTGGGGACAGAAGGCGGTTCATCTTGGGTCTCCGAGGACCATACCACATCTCCTGGAAGTTCGTGCCCGACGCCGAATTCCACCACGGAGGTCGCAGATTCGGAATTATCATTTACGGTAGGCGTTACCGAAGGTACTCCACACGCTTGCCGTTTTTGCGATAAAGCATTCCCTCGGAACAGTTACCTCAGACGGCATGAGCAGACTCATACGGATTGTATGCCTTTTCAATGTCAATATTGTAATACGTTGTTTAAACATAAGCGAAGTCGAGATCGTCATATAAAAATACATACCGGCGAAAAGAAGTATAAATGCTCGAAATGTGATGCTGGATATACCAGAAGCGATCATTTGAAAATCCATCTGAAGACGCACGACAATCGTAAACCATTCCAATGTACTTTGTGCAATCGAGGCTACGGCACAGCGGCGGCGCTCACGTCGCATATGCAGAATCACAAAAGATCGAACGAAATTTCATCTCAGCCGACACCAGCGGGCAGCATAAAATGTCACAAATGCTCGGAAACGTTCCGGGAACCGGAAGAGTTACAAAATCACATGAATTTGCATCAATCACCCGAAAACGTTCATAATTCGAATAACAAATCGTCCAAAAACTCGTACCCGACCATTCTAATATGTCCTTATTGTCGTAAGGATAATTTCTCAACGATGGATGCTCTACAATCGCACGTGCAATCAGTCCACAAATCCATTTTCAACGGAGACTTACAACGCGAGATCTCGAACCTGAAACTGAAATCTCCGGCGCCGACGCCATCTCAGCTAAACTCATCGTCGCCTTTAAACGTAACGCAGTCTTTCAATTCATTACCGTCCTACTATTGCGATCAATGCACTATGAAATTCTCATCGCTGCAGGCTCTTCAGAAACATACCAGCAGCGTTCATGGGTTCTCCAGCACCACCTACAATAACCTGAAGTACTTGATGTCGTCGCAGGAGATGTACAACAATGGCAAATTGTACTGTATGTACTGCGCAATACAATTCTTGACTCCGGCCGCGTACGCTGAGCATTACATCATCTTCCATAGTCCTTACCATCCTCAGCTAATGGGGTTGACGCCGCCCGAACAAATGAAACCGACTGATTTATCCAAAAAGACGTCTCCCGTCAAACGTTCCAATATCGACGAGCATCGATCGTCTCCTCGCAGCAAGAAGAATAAAGTCAATGAAAATTCGATACTGAATTCGAATAACcatcGTTACGGTTATCCGGGCCCATTTCTGTGCAATCAATGTAGCGCCGCATTTACAGACTTCGAATCGTTCCGGGCTCATATTAAATTACATATCGAAGAAACCAGCGGAGGTTTGCTGGGTGGCGCTTCTCCCATGGAGCGTAAACGTACATCGGCCGAATTCACGTGTCCGCATTGTCGATCTGTTTTCTCATCCAGTGAAGAGATCAGCCAACACATTGTGACTCATTTTTTAGCCTCCAGCGTCGAACACAGCTGCGAAAATTGCCAGAAATCGTACGACAAAGGGGATGATTTGCAAAAACATTTGATGGAAGTGCATGCCCATCATTTGTACAGTTGTTCAATCTGTAACGAggtttttgactcaaaaatggCTATTCAGCTTCATTTCACCATCAGACATAGTAACGAAGCGAAAGTATATCGATGCACTGGATGTTCATCGTCGAGCATCGCCTTCCATTCAGAACTGGAATTTGCCAATCATGTGAAGACCATGCATACCAATAATTCTCCTCTGTTGAGTGCATTCTCAGTCCATCATAATTCTCAAATGCAGAGATGCTTCATATGTCATATGAGTTTTCCGACCGAATTGGAAATGCAGCTGCATTTGGCGACCCATGGTAAACAATTCCAATGCACGTTGTGTCCTCAATCGTTCCATATTGAGTATTTACTGGATAAGCATATGCAGAATGATCATAGTACGCCGcaAATCAACGGATCATACGAAAACTGCTTAGACTCTGGCAACAAAGAATCATCGCCAATTCTCTCGCCCAACAATCGTTTCGACAATCAGATCAAAAAGAACGAGAATTCCGAAACAAAAAGCAACTTCATCTGCTGTGATATCTGCGAAAAATGCGAATTCACCAATGAAAACGAACTCCTCAGCCACAAGAAGCTTTTCCACCATAAATTATTGTCTCCCGTCAAAcatgaaaattcagaaaattccgAAGACCGattgaaattatctcaaaagcATAAATCCAACTCTTCGTCCTCTTCGCCTACAATTCGCTGCGATAGCAAGAAAATCGAATCGTTCAACGGCGATTCGAATGGAAGCAATTTGACCTGTTGTGAAATATGTGAAAAACGCGATTTCACCAGCGAAGCTGAACTAATGTCTCATAAGAAATTGATCCATAATGTCAAATTATCTCCTCATGGAAAGGTGAGTTTGAACTGCGCCTACTGCAAAGAAAACTGCAAATCGAGATCAGACTTGGAAAATCATATGAAAACTCACTCCCAAAATTCAACGTCGTCTGGAAAACATAAATGTATAATCTGTGATGAAATGTGCCCAACTGCTGCCGTCTTAGCCGAACATAAACTTACTCATTgcaagGTGCTGTCCGGAAAAACCTGCATGCAATGTAAAGGCTCGATCACAACCGAAGAGCAATTCTTCTCCCATATTCAACAACACAGCTCACCTCAGAATGGAACAAACAACAATAGCTCGTCCCAAAATTCTTTAGTTTTACCAACATTCTGCGTAATCTGTCGACAAACTTTATCTTCCGAGATGGAAGCTCGAATGCATGCCAGATTCCATCTCCATCAATCAGCTGATTTGGTCCCATGTTCTGTCTGCTTCCATATGAGCGAAAGGCAGGATTTGATCGCCGGCATATGCAAAGAGTGTTATCAAAGGCATGGAAAATCGTCCCCATTTCGATGCCCAGAATGTCACATGAAATTCGATAATGGTACCGCGATTGAAATTCATTTGGCTACGGTGCATAGAAAAAGTTACCAATGTATCAAATGCCAAgtgaGCTTCGATAACGAAAAAGAAATCCAACACCACGTCGCATCTCACGTAATGATCGACGGCCTAAACGGTCACGAATGTCGCCTATGTCGATTAGTATTGCCTTCGCCTCTACAACTCCAAGCTCATCTGATCGAGCATACTTTCGCCGGCTGCGCCACGTTCACCTGCTATTTATGTAGTTCTGTATTCACAACAGCTCAAGGCCTGCAGACTCACATTTTAGAGCATGGTTTAGCTGCCAGACCCTACGACTGCTCCAGATGCAAACAGAAATTCTTCTTTACTTCCGAACTAGAGCACCACAGCTTCGTACATTTGGAGGAATTAGCCCTGAGTGAAGGTCACGGATATTTCTACGGTCAAGATAAAAACCTGCTGAAAGAAAAATCCGCCAGCATTCCGTATTTAAATCATTCCATCACTTTGGCCGAGAATTTATACAACAATAACAAAGAACCGAGCAATAAATACCACTGCACCGAATGCGGTACCGATTTCCCCCACGCCAACGATCTATACGATCACAAAAATCGTTTCCACTCGCCATCCGAAAGATATGTCCAGAACGGCGAACACAAACGAAAAAGAGAACCCTCCAATCCTCCCGATACCAACAGAGTCAAGTATGAAGAGCAAAATGACACCGTCGACGTAGAAGAGAAACCCGAATCTAAACAGAACGATTGCGAATCGGAAGACGAACAGATCGACGTCGTCACTACCAAGACTGAAGATCAACcggaaaatgtcgaaaatgataaataa
Protein Sequence
MLLKSPTASSEDSAGAQVALFIKLLTLNWRVILDTLGTEGGSSWVSEDHTTSPGSSCPTPNSTTEVADSELSFTVGVTEGTPHACRFCDKAFPRNSYLRRHEQTHTDCMPFQCQYCNTLFKHKRSRDRHIKIHTGEKKYKCSKCDAGYTRSDHLKIHLKTHDNRKPFQCTLCNRGYGTAAALTSHMQNHKRSNEISSQPTPAGSIKCHKCSETFREPEELQNHMNLHQSPENVHNSNNKSSKNSYPTILICPYCRKDNFSTMDALQSHVQSVHKSIFNGDLQREISNLKLKSPAPTPSQLNSSSPLNVTQSFNSLPSYYCDQCTMKFSSLQALQKHTSSVHGFSSTTYNNLKYLMSSQEMYNNGKLYCMYCAIQFLTPAAYAEHYIIFHSPYHPQLMGLTPPEQMKPTDLSKKTSPVKRSNIDEHRSSPRSKKNKVNENSILNSNNHRYGYPGPFLCNQCSAAFTDFESFRAHIKLHIEETSGGLLGGASPMERKRTSAEFTCPHCRSVFSSSEEISQHIVTHFLASSVEHSCENCQKSYDKGDDLQKHLMEVHAHHLYSCSICNEVFDSKMAIQLHFTIRHSNEAKVYRCTGCSSSSIAFHSELEFANHVKTMHTNNSPLLSAFSVHHNSQMQRCFICHMSFPTELEMQLHLATHGKQFQCTLCPQSFHIEYLLDKHMQNDHSTPQINGSYENCLDSGNKESSPILSPNNRFDNQIKKNENSETKSNFICCDICEKCEFTNENELLSHKKLFHHKLLSPVKHENSENSEDRLKLSQKHKSNSSSSSPTIRCDSKKIESFNGDSNGSNLTCCEICEKRDFTSEAELMSHKKLIHNVKLSPHGKVSLNCAYCKENCKSRSDLENHMKTHSQNSTSSGKHKCIICDEMCPTAAVLAEHKLTHCKVLSGKTCMQCKGSITTEEQFFSHIQQHSSPQNGTNNNSSSQNSLVLPTFCVICRQTLSSEMEARMHARFHLHQSADLVPCSVCFHMSERQDLIAGICKECYQRHGKSSPFRCPECHMKFDNGTAIEIHLATVHRKSYQCIKCQVSFDNEKEIQHHVASHVMIDGLNGHECRLCRLVLPSPLQLQAHLIEHTFAGCATFTCYLCSSVFTTAQGLQTHILEHGLAARPYDCSRCKQKFFFTSELEHHSFVHLEELALSEGHGYFYGQDKNLLKEKSASIPYLNHSITLAENLYNNNKEPSNKYHCTECGTDFPHANDLYDHKNRFHSPSERYVQNGEHKRKREPSNPPDTNRVKYEEQNDTVDVEEKPESKQNDCESEDEQIDVVTTKTEDQPENVENDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01150697;
90% Identity
iTF_01150697;
80% Identity
-