Pxut004820.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio xuthus
Gene Symbol
-
Assembly
GCA_000836235.1
Location
NW:4193661-4196376[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.086 4.9 7.5 1.8 2 23 179 201 178 201 0.91
2 10 0.013 0.74 10.1 1.3 1 23 207 230 207 230 0.96
3 10 1.8e-05 0.001 19.1 3.5 1 23 236 258 236 258 0.94
4 10 4.3e-07 2.5e-05 24.2 5.1 1 23 264 286 264 286 0.99
5 10 9.1e-06 0.00052 20.0 0.1 1 23 292 314 292 314 0.97
6 10 8.4e-05 0.0048 17.0 0.5 1 23 320 342 320 342 0.97
7 10 0.00015 0.0086 16.2 1.6 2 23 439 461 438 461 0.95
8 10 8.4e-06 0.00048 20.1 4.3 1 23 467 489 467 489 0.99
9 10 0.00072 0.041 14.1 1.2 1 22 495 516 495 516 0.93
10 10 0.00018 0.01 15.9 0.1 3 23 526 546 524 546 0.92

Sequence Information

Coding Sequence
ATGGAAGATTCCTACATTATAGCCAACTTTCACGCGCTGTGTCGTCTTTGCTTGACTAAAAGTTCGCTAACAACATCAATATTCGCCACTGCTCCTGATGAAGACTTGAATATGCCATTAACCTCCAAAATAGCTGAGTGTTTTGAAATGCAGTTGGATCCCAATGATGGTCTTCCAGgaataatatgttataaatgcctattcaaagtaaataaatgttcaaaGTTTAGATTACAGTGCATTCAAAATGAAGCTAGATTAAAGCAAATAACTAACAGAGTGAATGAGCTAGATACTTCCAATTCATCTGATTATagtaattacaattataaaaataatcatgaaATGGTAAAACCAAAGCCTGAGGACTACATTGTTGAAGACAGTGTTGTGATGGTTGTAGACCCCAGTTTAGATTATGACTCCTCTGAGGAGGAATCTGAAAATGTTGAACAGCCTGAGagtgaaaaaaatgaatgtgaAAATATTCAAGAGGGAGAGCCTATGACAGaatcgttttttaaaaatgtatctatGTGCCAGTACTGTGATCAAGCATTTGTTTCTCAAGAAAAGTGTAAGGAGCATGAACAGAGTTACCATGACCCTAACATGCCATACAAATGTGTTGAATGCAGCTTGGTCTTTGCAGAGCGTAATCAATATGTACAGCATACTAAACATGTGCACCAAAGTGACAAGCCATACCATTGTCCGGAatgtgaaaaatgttttggtAGAAGATCTGATTTAAGAAAACATTCAGTTGTTCATACAGGCATAAGACCATTCCAATGTCATTATTGTCTTAAGAGTTTTTCACGGAACACTAATTTAAGTAAGCATTTGCGAATACATGCAGGGCATAAACCTCATGTCTGTCCCATGTGTCCCAGAAGTTTTGTAGCTAAGGGAGATCTACAACGGCATGTTCTCATTCACTCTGGTATGAAACCTTATGCTTGCAGTAAATGTCCATTATCCTTTGGTCGAAGGgataaactaataaaacatgaattaAAACATGGTCCTCTCAATtcacaaattaaaagaaatgaatctGAGATTGATCAAGAAAGTCATGACATGGTCGTCAGTATTAATCCTTTTAGCAACATAATGACATCCCCTACTCAGCTTAATCCTGAAAATTCTATGGGGGAATATGAATTTCCTAGTGTACCTGACCACATTGTAGGTGAAAgtagttttataaatcatgTAAGAAAGAATCCTCCCACCCCTAGTAAGTCAATCCAAAGTTCACCTGGTAAACAGAAAATgatgacaaataaaaacaaaccaaaGAACATAAAATGCCATCAATGTACAAAAAGATTTTCATCTCTTGATGCCTATAAAACACATGTTTCCGTTGCTCATATCGGATCTAGAGTGTTTCAATGCAAAGTGTGTTTTAAGAAGTTTTCCAGGAAAAGAGAATTAGACCGtcacacacaaacacacatgGGCATGAAACCGTTCTCATGTAATAGTTgtgataagaaatttaatagtaaGGAGAAATTGGATAATCATGAACAAACACAGGAATGTTTAGTTGTTAACATGCCTTGCATAGAATGCGGTTTGACTTTCAAAAAGAAAGCGGATTTAGTTGCACACATTAAATCTCATTTTACAGATAATTTTGATGACAAACTATGtgtgaatgaaataaaaaaagagacaGAATCAGATTTCCAGATTGATGAAAACTTTTATGAATTAGAAACTTGA
Protein Sequence
MEDSYIIANFHALCRLCLTKSSLTTSIFATAPDEDLNMPLTSKIAECFEMQLDPNDGLPGIICYKCLFKVNKCSKFRLQCIQNEARLKQITNRVNELDTSNSSDYSNYNYKNNHEMVKPKPEDYIVEDSVVMVVDPSLDYDSSEEESENVEQPESEKNECENIQEGEPMTESFFKNVSMCQYCDQAFVSQEKCKEHEQSYHDPNMPYKCVECSLVFAERNQYVQHTKHVHQSDKPYHCPECEKCFGRRSDLRKHSVVHTGIRPFQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPMCPRSFVAKGDLQRHVLIHSGMKPYACSKCPLSFGRRDKLIKHELKHGPLNSQIKRNESEIDQESHDMVVSINPFSNIMTSPTQLNPENSMGEYEFPSVPDHIVGESSFINHVRKNPPTPSKSIQSSPGKQKMMTNKNKPKNIKCHQCTKRFSSLDAYKTHVSVAHIGSRVFQCKVCFKKFSRKRELDRHTQTHMGMKPFSCNSCDKKFNSKEKLDNHEQTQECLVVNMPCIECGLTFKKKADLVAHIKSHFTDNFDDKLCVNEIKKETESDFQIDENFYELET