Basic Information

Insect: Papilio gigon
Gene Symbol: -
Assembly: GCA_027563995.1
Location: JAODUI010000023.1:5861873-5863726[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.069 5 7.9 2.7 1 23 178 201 178 201 0.89

2 10 0.0045 0.33 11.7 1.2 1 23 207 230 207 230 0.96

3 10 2e-05 0.0014 19.1 3.5 1 23 236 258 236 258 0.94

4 10 4.7e-07 3.4e-05 24.2 5.1 1 23 264 286 264 286 0.99

5 10 1e-05 0.00072 20.0 0.1 1 23 292 314 292 314 0.97

6 10 9.2e-05 0.0066 17.0 0.5 1 23 320 342 320 342 0.97

7 10 0.00017 0.012 16.1 1.6 2 23 439 461 438 461 0.95

8 10 9.2e-06 0.00066 20.1 4.3 1 23 467 489 467 489 0.99

9 10 0.00042 0.03 14.9 0.8 1 20 495 514 495 516 0.93

10 10 0.00015 0.011 16.4 0.1 3 23 526 546 524 546 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.069	5	7.9	2.7	1	23	178	201	178	201	0.89
2	10	0.0045	0.33	11.7	1.2	1	23	207	230	207	230	0.96
3	10	2e-05	0.0014	19.1	3.5	1	23	236	258	236	258	0.94
4	10	4.7e-07	3.4e-05	24.2	5.1	1	23	264	286	264	286	0.99
5	10	1e-05	0.00072	20.0	0.1	1	23	292	314	292	314	0.97
6	10	9.2e-05	0.0066	17.0	0.5	1	23	320	342	320	342	0.97
7	10	0.00017	0.012	16.1	1.6	2	23	439	461	438	461	0.95
8	10	9.2e-06	0.00066	20.1	4.3	1	23	467	489	467	489	0.99
9	10	0.00042	0.03	14.9	0.8	1	20	495	514	495	516	0.93
10	10	0.00015	0.011	16.4	0.1	3	23	526	546	524	546	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTATATTATAGCTAACTTTCATGCTTTGTGTCGTCTTTGCCTCACTAAAAGTTCGCTAACAATATCAATATTCGCCGCTGCTCCTGATGAAGACATGAATATGTCTTTAACCTCCAAAATAGCTGAATGTTTTGAAATGCAGGTGGATCCAAACGATGGTCTCCCCGGAAGAATATGTTATAAATGCTTATTTAAAGTTAATAAATGTTCGAAGTTTAAATTACAGTGCATTCAAAATGAAGCTAGATTGAAAGAAATAACAAACAGAGTCAATGATTTAGACACGTCAAATTCATCTGATTATAGTAATTACAATTATAAAAATAATCATGAAATGGCAAAACCAAAGCCTGAGGATTATATAGTTGAAGACAGTGTTGTGATGGTTGTGGACCCCAGTCTAGATTATGACTCCTCCGAGGAGGAATCTGAAAATGTTGAACAACCTGAGAGTGAAAAAAATGAATGTGAAAATATACAAGAGGGAGAGCCCATGACCGAATCGTTTTTTAAGAATGTATTCATGTGTCAGTACTGTGATCAAGCATTTGTTTCTCAGGAGAAATGTAAAGAACATGAACAGAATTATCATGACCCTAATATGCCATATAAGTGTGTGGAGTGCAGCCTGGCATTTGCAGAGCGCAGCCAATATGTACAGCATACTAAACATGTGCATGGAAGTGACAAGCCATATCATTGTCCAGAATGTGAAAAATGTTTTGGCAGAAGGTCTGATTTAAGAAAACATTCCGTTGTTCACACGGGCATAAGACCATTCCAATGTCATTACTGTCTTAAGAGTTTTTCACGTAACACTAATTTAAGTAAACATTTACGAATACATGCAGGACATAAACCCCATGTTTGCCCAATGTGTCCCAGAAGTTTTGTAGCCAAGGGGGATCTACAACGGCATGTTCTCATCCACTCTGGTACAAAACCTTATGCTTGCAGTAAATGTCCCTTGTCATTTGGTCGAAGAGATAAACTTATAAAACATGAATTGAAACACGGCCCTCTCAATTCACAAATAAAAAGGAATGAATCTGAGATTGATCAAGAGAATCATGACATGGTTGTCAGCATTAATCCTTTTAGCAACATAATGACATCACCAACTGATCTCAACCCGGAAAATTCCATTGGGGATTATGATTTTCCCAGTGTTCCTGACCATATAGTAGGTGAAAGTAGTTTTGTAAATCATGTAAGAAAAAATCCTCCCACCCCTAGTAAGTCAATGCAAGGTTCACCTGGTAAGCAGAAAATGATGACTAGTAAAAATAAACCAAAGAACATAAAATGCCATCAATGTACAAAAAGATTTTCATCGCTGGACGCGTACAAGACGCATGTTTCTATTGCTCATATAGGATCAAGAGTTTTTCAATGCAAGGTGTGTTTTAAGAAGTTCTCCAGGAAAAGGGAATTGGACCGTCACACACAAACACATATGGGCATGAAACCATTCTCTTGCAGTAATTGTGATAAGAAATTCAATAGTAAGGAGAAATTAGATAATCATGAACAAGCACAGGAGTGTTTGGTTGTCAATATGCCTTGCATAGAATGCGGTATGACTTTCAAAAAGAAAGCAGATTTAGTTGCGCACATTAAATCTCACTTTACAGACAATTTTGATGACAAACTATGTATGAGTGAAATAAAGAAAGAGGCTGAATCAGATTTCCAGCTGGATGAGAATTTTTATGAGTTGGAAACCTGA
Protein Sequence: MEDSYIIANFHALCRLCLTKSSLTISIFAAAPDEDMNMSLTSKIAECFEMQVDPNDGLPGRICYKCLFKVNKCSKFKLQCIQNEARLKEITNRVNDLDTSNSSDYSNYNYKNNHEMAKPKPEDYIVEDSVVMVVDPSLDYDSSEEESENVEQPESEKNECENIQEGEPMTESFFKNVFMCQYCDQAFVSQEKCKEHEQNYHDPNMPYKCVECSLAFAERSQYVQHTKHVHGSDKPYHCPECEKCFGRRSDLRKHSVVHTGIRPFQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPMCPRSFVAKGDLQRHVLIHSGTKPYACSKCPLSFGRRDKLIKHELKHGPLNSQIKRNESEIDQENHDMVVSINPFSNIMTSPTDLNPENSIGDYDFPSVPDHIVGESSFVNHVRKNPPTPSKSMQGSPGKQKMMTSKNKPKNIKCHQCTKRFSSLDAYKTHVSIAHIGSRVFQCKVCFKKFSRKRELDRHTQTHMGMKPFSCSNCDKKFNSKEKLDNHEQAQECLVVNMPCIECGMTFKKKADLVAHIKSHFTDNFDDKLCMSEIKKEAESDFQLDENFYELET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01149788;
90% Identity: iTF_01144732;
80% Identity: -