Basic Information

Insect: Pachliopta kotzebuea
Gene Symbol: prg_1
Assembly: GCA_018246255.1
Location: DWLS01000550.1:3954-5805[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 9.5 7.6 1.5 2 23 179 201 178 201 0.92

2 10 0.019 1.7 9.9 1.5 1 23 207 230 207 230 0.96

3 10 5.2e-06 0.00047 21.2 0.7 1 23 236 258 236 258 0.97

4 10 3.9e-07 3.5e-05 24.7 4.9 1 23 264 286 264 286 0.99

5 10 1.1e-05 0.00098 20.2 0.1 1 23 292 314 292 314 0.97

6 10 0.00034 0.031 15.5 2.3 1 23 320 342 320 342 0.96

7 10 7.1e-05 0.0064 17.6 1.0 2 23 440 462 439 462 0.95

8 10 8e-05 0.0072 17.5 1.6 1 23 468 490 468 490 0.97

9 10 0.029 2.7 9.4 2.5 2 23 497 518 496 518 0.96

10 10 0.0023 0.21 12.8 0.1 5 23 529 547 526 547 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	9.5	7.6	1.5	2	23	179	201	178	201	0.92
2	10	0.019	1.7	9.9	1.5	1	23	207	230	207	230	0.96
3	10	5.2e-06	0.00047	21.2	0.7	1	23	236	258	236	258	0.97
4	10	3.9e-07	3.5e-05	24.7	4.9	1	23	264	286	264	286	0.99
5	10	1.1e-05	0.00098	20.2	0.1	1	23	292	314	292	314	0.97
6	10	0.00034	0.031	15.5	2.3	1	23	320	342	320	342	0.96
7	10	7.1e-05	0.0064	17.6	1.0	2	23	440	462	439	462	0.95
8	10	8e-05	0.0072	17.5	1.6	1	23	468	490	468	490	0.97
9	10	0.029	2.7	9.4	2.5	2	23	497	518	496	518	0.96
10	10	0.0023	0.21	12.8	0.1	5	23	529	547	526	547	0.93

Sequence Information

Coding Sequence: ATGGAAGATTCGTTTATAATTGCTAACTTTCACAATTTGTGTCgtctttgtttaaataaaagtacgcTTACAATATCAATTTTTGGATTAGCTCCTGATGACGATTCTAATGTTTCTCTAACCTCTAAAATCGCTGAATGTTTTGAGATGCAGGTAGATCCCAATGATGGCCTTCCAGGAAGGATctgttataaatgtttatttaaactgaataaatgctctaattttaaattacaatgcaTTCAAAATGAGGCTAGACTAAGGCAACTAACGCTTCATGTTAATGAATTGGACAATTCAAATTCATctgattttagtaattataattataaaaacaattatgaaaTACCAAAACCTAAGCCTGAGGACTATATTGTTGAAGACAGTGTTGTGATGGTTGTTGATCCTAGCTTAGATTATGACTCTTCAGAAGAATCAGAAAATGTTGAACAACCTGAAAATGAAATACATGAACGTGGTGATAACACAATTGAAGGAGAACCCTTAACTGAAccatactttaaaaatgtttcaatgtGTCAATATTGTGATCAAGCTTTTGTTTCACCAGAAAAGTGCAAAGAGCATGAACAAAAGTATCATGATCCAAATCTCCCATATAAATGTGTTGAATGTAGCTCAGTTTTTCCAGAGCGTAGTCAATATGTGCAACACACGAAACATGTACATGGCATGGATAAACCATATCAATGTTCAGAGTGTGTAAAAAGTTTTGGCAGAAGATCAGACTTAAGGAAGCATTCAATTGTTCATACAGGCATCAGACCATATCAGTGTCATTATTGTCTTAAAAGTTTCTCACGTAACACAAACTTAAGCAAGCACTTAAGGATTCACGCGGGTCATAAACCACATGTTTGTCCAGTATGCCCTAGAAGTTTTGTAGCAAAGGGAGATCTGCAACGTCATGTACTTGTTCACTCTGGGATGAAACCTTTTGCCTGCCATAAATGTCCTCTAACATTTGGGCGTAgagacaaattaataaaacattcacTAAAACATGGACCTCCTAGTCCAGACAATAAAACCATGACATCTAAAGTAAATCAAGACGGTCATAATATGGTTGTAAGTGTTAATCCATTCAGCAACCTAATGACCTCACCGACTCAAGTTAACCCTGAGAATTCAATTTTAGATTATGAATTTCCAAGAGTACCTGATCACATAGTAGGAGAAGGGAGTTTTATTAATCAAGTTACAAAAAACCCACCCACCTCTAGTAAATCATTACAAAGTTCAccacataaacaaaaaatgtctgtaataaataaaaacaaaccaaagaatataaaatgcCATCAATGTCCTAAAAGATTTTCGTCGTTAGATGCTTATAAAACACATGTATCAATTGCACACATGGGATCCAGAGTGTTTCAATgtaaagtatgttttaaaaaattcccAAGGAAGAGGGAACTCGACCGACATGCCACTATCCATTCAGTTATGAAGACATTACCATGTACTCaatgtgataaaaaatttaattgtaaggATAAATTAGATATTCACGAACAAACACATGAAAGTTTAGTTGTTAACATGCCTTGTATAGAATGTGGCGCAACTTTTGAAAAGAAAGCCGATTTGGTTTCCCATATTAAATCCCATTTCACTGATAATTTTGATGAAAAACTTGATTCAACAGAAATCAAAAAAGAGACTGAGTCTGATTTCCAGCTAGATGAGAACTTTTATGAATTGGAAACCTGA
Protein Sequence: MEDSFIIANFHNLCRLCLNKSTLTISIFGLAPDDDSNVSLTSKIAECFEMQVDPNDGLPGRICYKCLFKLNKCSNFKLQCIQNEARLRQLTLHVNELDNSNSSDFSNYNYKNNYEIPKPKPEDYIVEDSVVMVVDPSLDYDSSEESENVEQPENEIHERGDNTIEGEPLTEPYFKNVSMCQYCDQAFVSPEKCKEHEQKYHDPNLPYKCVECSSVFPERSQYVQHTKHVHGMDKPYQCSECVKSFGRRSDLRKHSIVHTGIRPYQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPVCPRSFVAKGDLQRHVLVHSGMKPFACHKCPLTFGRRDKLIKHSLKHGPPSPDNKTMTSKVNQDGHNMVVSVNPFSNLMTSPTQVNPENSILDYEFPRVPDHIVGEGSFINQVTKNPPTSSKSLQSSPHKQKMSVINKNKPKNIKCHQCPKRFSSLDAYKTHVSIAHMGSRVFQCKVCFKKFPRKRELDRHATIHSVMKTLPCTQCDKKFNCKDKLDIHEQTHESLVVNMPCIECGATFEKKADLVSHIKSHFTDNFDEKLDSTEIKKETESDFQLDENFYELET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01149788;
90% Identity: iTF_01115896;
80% Identity: -