Basic Information

Insect: Parnassius mnemosyne
Gene Symbol: prg
Assembly: GCA_963668995.1
Location: CAVLGL010000115.1:19011348-19013153[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.079 17 8.1 2.1 1 23 178 201 178 201 0.86

2 10 0.0013 0.26 13.7 1.0 1 23 207 230 207 230 0.97

3 10 9.7e-07 0.0002 23.5 1.8 1 23 236 258 236 258 0.96

4 10 4e-07 8.4e-05 24.7 3.0 1 23 264 286 264 286 0.99

5 10 1.2e-05 0.0025 20.1 0.1 1 23 292 314 292 314 0.97

6 10 7e-05 0.015 17.7 1.0 1 23 320 342 320 342 0.97

7 10 6.9e-05 0.014 17.7 1.0 2 23 437 459 436 459 0.95

8 10 0.00014 0.029 16.8 2.5 1 23 465 487 465 487 0.95

9 10 5 1.1e+03 2.4 4.5 1 20 493 512 493 514 0.83

10 10 0.00039 0.082 15.3 0.1 3 23 524 544 522 544 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.079	17	8.1	2.1	1	23	178	201	178	201	0.86
2	10	0.0013	0.26	13.7	1.0	1	23	207	230	207	230	0.97
3	10	9.7e-07	0.0002	23.5	1.8	1	23	236	258	236	258	0.96
4	10	4e-07	8.4e-05	24.7	3.0	1	23	264	286	264	286	0.99
5	10	1.2e-05	0.0025	20.1	0.1	1	23	292	314	292	314	0.97
6	10	7e-05	0.015	17.7	1.0	1	23	320	342	320	342	0.97
7	10	6.9e-05	0.014	17.7	1.0	2	23	437	459	436	459	0.95
8	10	0.00014	0.029	16.8	2.5	1	23	465	487	465	487	0.95
9	10	5	1.1e+03	2.4	4.5	1	20	493	512	493	514	0.83
10	10	0.00039	0.082	15.3	0.1	3	23	524	544	522	544	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTACATTATCGCCAACTTTCATTCTCTTTGCCGCCTTTGCTTAAATAAAAGTGCGCTTACCACATCAATATTCGGAACTGCTCCTGATGAAGACTCTAATATGACTCTAACCTCTAAAATCGCTGAATGTTTTGAAATGCAGATGGACCCTAATGATGGACTTCCAGGAAGGATTtgttataaatgtttatttaaagtGAATAAGTGTTCGAAGTTTAGATTAAAGTGCATTCAAAATGAGGCAAGATTAAAGCAAATTACAAATCGTGTCAATGAGTTAGACAATTCCAATTCATCTGAATATAGTAAttacaataactataaaaataaccaTGAAATTCAGAAACCTAAGCCTGAAGATTATATTGTTGAAGATAGTGTGGTAATGGTTGTTGATCCTAGTCTTGATTATGACTCCTCTGAAGAATCAGAAAATATTGAACAACCTGAGAATGAAACAATTGACCGTGATAACACACCAGAGGGAGAGCCAATGTCTGAATCTTTTTTTAAGAATGTCTTCATGTGTCAATATTGTGATCAAGCTTTTGTTTCCCAAGAGAAATGTAAAGAACATGAACAAGGTTATCACGATCCAAACATGCCCTATAAATGTGTTGAGTGTAGTATAGTCTTTGCAGAGCGTAGTCAGTATGTGCAACATACCAGACATGTTCATGGAAGTGATAAACCATACAACTGCCCTGAATGTGATAAATGTTTTGGTAGAAGATCAGATTTAAGAAAGCATTCTATAGTCCATACTGGCATAAGGCCATTTCAGTGTCAATATTGTCTTAAAAGTTTCTCTCGTAATACAAACTTAAGTAAACATTTAAGAATCCATGCTGGTCATAAACCACATGTATGTCCTATGTGTCCCAGAAGTTTTGTAGCTAAAGGAGATCTACAACGTCATGTTTTAGTTCATTCTGGTATGAAACCTTATGCTTGTCGTAAATGCCCTCTTACATTTGGTAGaagagataaattaataaaacatcaATTAAAACATGGACACATTAGCCCAGAACACAAAACAAATGAATCTGAAAATGATCAGGAGACTCATGACATGGTTGTGAATGTTAATCCTTTTAGTAACTTAATGTCTTCGCCTACACAGCTTAATCCCGATACTGCAATGAATTATGACTTTCCCAGAGTACCAGATCACATAGTTGGTGAAGGTAGTTTTATAAATCAAGTTAGAAAAAATCCACCCACCTCTAGTAAATTAACTCAAAGTTCACCAAGTAAACCAAAAATGAGCACCAAAAATaaacctaaaaatataaaatgccaCCAGTGCCCTAAAAGATTTTCATCATTAGATGCCTATAAAACACATGTCTCAGTTGCCCATATTGGATCTAGAGGGTTTCAATGCAAAGTGTGTTTTAAAAAATTTTCGAGGAGAAGAGAATTAGACCGTCATGCAACACTCCATTCAGGAACAAAATGTTTTTCCTGTAACCAGTGtgataaaaaatgtaattgtaaAGAAAAATTAGATAGCCATGAACAAATGCAAGAGTGTGTGGTTGTCAATATGCCATGCATTGAATGTGGAGCAACTTTTAAGAAGAAAGCAGATTTAGTTGCACACATCAAATCACACTTCAGTGATAATTTTGATGATAAATTTAATGAAACAGAAATTAAGAAAGAGACTGAAACTGATTTTGAACTGCATGAGAATTTTTATGAATTGGAAACCTGA
Protein Sequence: MEDSYIIANFHSLCRLCLNKSALTTSIFGTAPDEDSNMTLTSKIAECFEMQMDPNDGLPGRICYKCLFKVNKCSKFRLKCIQNEARLKQITNRVNELDNSNSSEYSNYNNYKNNHEIQKPKPEDYIVEDSVVMVVDPSLDYDSSEESENIEQPENETIDRDNTPEGEPMSESFFKNVFMCQYCDQAFVSQEKCKEHEQGYHDPNMPYKCVECSIVFAERSQYVQHTRHVHGSDKPYNCPECDKCFGRRSDLRKHSIVHTGIRPFQCQYCLKSFSRNTNLSKHLRIHAGHKPHVCPMCPRSFVAKGDLQRHVLVHSGMKPYACRKCPLTFGRRDKLIKHQLKHGHISPEHKTNESENDQETHDMVVNVNPFSNLMSSPTQLNPDTAMNYDFPRVPDHIVGEGSFINQVRKNPPTSSKLTQSSPSKPKMSTKNKPKNIKCHQCPKRFSSLDAYKTHVSVAHIGSRGFQCKVCFKKFSRRRELDRHATLHSGTKCFSCNQCDKKCNCKEKLDSHEQMQECVVVNMPCIECGATFKKKADLVAHIKSHFSDNFDDKFNETEIKKETETDFELHENFYELET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01149788;
90% Identity: iTF_01154444;
80% Identity: -