Basic Information

Insect: Papilio polytes
Gene Symbol: -
Assembly: GCA_000836215.1
Location: NW:3224253-3227128[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.13 6.7 6.8 1.9 2 23 178 200 177 200 0.88

2 10 0.0025 0.13 12.3 1.3 1 23 206 229 206 229 0.96

3 10 1.6e-05 0.00085 19.1 3.5 1 23 235 257 235 257 0.94

4 10 3.9e-07 2e-05 24.2 5.1 1 23 263 285 263 285 0.99

5 10 8.4e-06 0.00043 20.0 0.1 1 23 291 313 291 313 0.97

6 10 7.7e-05 0.004 17.0 0.5 1 23 319 341 319 341 0.97

7 10 0.00014 0.0071 16.2 1.6 2 23 437 459 436 459 0.95

8 10 2.4e-05 0.0013 18.6 4.1 1 23 465 487 465 487 0.98

9 10 0.00013 0.0068 16.3 1.3 1 22 493 514 493 514 0.93

10 10 0.00016 0.0085 16.0 0.1 3 23 524 544 522 544 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.13	6.7	6.8	1.9	2	23	178	200	177	200	0.88
2	10	0.0025	0.13	12.3	1.3	1	23	206	229	206	229	0.96
3	10	1.6e-05	0.00085	19.1	3.5	1	23	235	257	235	257	0.94
4	10	3.9e-07	2e-05	24.2	5.1	1	23	263	285	263	285	0.99
5	10	8.4e-06	0.00043	20.0	0.1	1	23	291	313	291	313	0.97
6	10	7.7e-05	0.004	17.0	0.5	1	23	319	341	319	341	0.97
7	10	0.00014	0.0071	16.2	1.6	2	23	437	459	436	459	0.95
8	10	2.4e-05	0.0013	18.6	4.1	1	23	465	487	465	487	0.98
9	10	0.00013	0.0068	16.3	1.3	1	22	493	514	493	514	0.93
10	10	0.00016	0.0085	16.0	0.1	3	23	524	544	522	544	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTACATTATAGCGAACTTTCACGCGCTGTGTCGTCTTTGCTTGTCTAAAAGTTCGCTAACAATATCAATTTTCGCTGCCGCTCCTGATGAAGAGTTGAATATGCCTTTAACCTCCAAAATAGCTGAATGTTTTGAAATGCAGGTGGATCCTAATGATGGTCTTCCAGGAAGAATATGTTACAAATGTCTATTcaaagttaataaatgttCAAAGTTCAAATTACAGTGCATTCAAAATGAAGCTAGATTGAAGCAAATAACTAACAGAGTGAATGAGCTAGACACTTCAAATTCATCTGATtatagtaattataattataaaaatcatgaAATGGTAAAACCAAAGCCTGAGGACTACATAGTTGAAGACAGTGTAGTGATGGTTGTAGACCCCAGTTTAGATTATGACACCTCCGAGGAGGAATCAGAAAATGTTGAACAACCTgagaatgaaaaaaatgaatgtGAAAACATTCAAGAGGGTGAGCCCATAACTGAATCgtttttcaaaaatgtatcCATGTGCCAGTACTGCGATCAAGCATTTGTTTCTcaagaaaaatgtaaagagCATGAACAGAATTACCATGACCCTAATATGCCATACAAATGTGTGGAATGCAGCTTGGTTTTTGCAGAGCGTAGTCAATATGTACAGCACACTAAACATGTCCACCAAAGTGACAAGCCTTACCATTGTCCtgaatgtgaaaaatgttttggtaGAAGATCagatttaagaaaacattcaGTTGTTCACACAGGCATAAGACCTTTCCAATGTCATTATTGTCTTAAGAGTTTTTCACGTAATACTAATTTAAGTAAGCATTTGCGTATACATGCAGGACACAAACCCCATGTCTGTCCAATGTGTCCCAGAAGTTTTGTAGCAAAGGGAGATTTACAGCGTCATGTACTCATTCACTCTGGTATGAAACCTTATGCTTGCAGTAAATGTCCTTTATCCTTTGGTAGAAGGGATAAGCTGATAAAACatgaattaaaacatgttcCTATTAATTCGCAAATGAATAGAATTGAATCAGAAATTGATCAAGAGACCCATGATATGGTTGTCAGTATTAATCCTTTTAGCAACATAATGACCTCTCCTACTCAGCTCAATGCTGAAAATTCCATTGGAGATTATGACTTTCCCAGTGTACCTGATCACATTGTAGGTGaaagtagttttataaatcatGTAAGAAAGAACCCTCCCACCCCTAGTAAGTCATTACAAGGCTCGCCTAGTAAGCAGAAAATgactaacaaaaacaaaccaaAGAACATCAAATGCCATCAATGTACGAAAAGATTTTCATCCCTAGATGCATATAAAACACATGTTTCTGTCGCGCATATTGGATCTAGAGGTTTTCAATGCAAagtgtgttttaaaaagttctcCAGGAAACGAGAATTGGACCGCCATTCGCAAACTCATATGGGCATGAAACCATTTACATGCAGTAATTGTGATAAGAAATTCAACACTAAAGAGAAATTAGATAATCATGAACAAACACAGGAGTGTTTGGTAGTTAACATGCCATGCATTGAATGCGGTTTGACATTCAAAAAGAAGGCTGATTTAGTAGCACATATAAAATCTCACTTCACAGATACTTTTGATGAAAAACTTTGcatgaatgaaattaaaaaagagacAGAAACTGAATTCCAGCTTGATGATAACTTTTATGAATTGGAAACCTGA
Protein Sequence: MEDSYIIANFHALCRLCLSKSSLTISIFAAAPDEELNMPLTSKIAECFEMQVDPNDGLPGRICYKCLFKVNKCSKFKLQCIQNEARLKQITNRVNELDTSNSSDYSNYNYKNHEMVKPKPEDYIVEDSVVMVVDPSLDYDTSEEESENVEQPENEKNECENIQEGEPITESFFKNVSMCQYCDQAFVSQEKCKEHEQNYHDPNMPYKCVECSLVFAERSQYVQHTKHVHQSDKPYHCPECEKCFGRRSDLRKHSVVHTGIRPFQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPMCPRSFVAKGDLQRHVLIHSGMKPYACSKCPLSFGRRDKLIKHELKHVPINSQMNRIESEIDQETHDMVVSINPFSNIMTSPTQLNAENSIGDYDFPSVPDHIVGESSFINHVRKNPPTPSKSLQGSPSKQKMTNKNKPKNIKCHQCTKRFSSLDAYKTHVSVAHIGSRGFQCKVCFKKFSRKRELDRHSQTHMGMKPFTCSNCDKKFNTKEKLDNHEQTQECLVVNMPCIECGLTFKKKADLVAHIKSHFTDTFDEKLCMNEIKKETETEFQLDDNFYELET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01149788;
90% Identity: iTF_01144732;
80% Identity: -