Ppol000740.1
Basic Information
- Insect
- Papilio polyxenes
- Gene Symbol
- -
- Assembly
- GCA_026167825.1
- Location
- JAOPJD010000004.1:331580-334876[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3 6.9e+03 -2.7 0.0 31 41 117 128 117 130 0.83 2 5 1.4e-10 3.1e-07 30.5 0.0 3 39 185 221 183 225 0.90 3 5 2.9e-12 6.6e-09 35.8 0.3 2 39 238 275 237 278 0.93 4 5 3.8e-15 8.7e-12 45.0 0.1 2 45 293 337 292 337 0.96 5 5 8.2e-18 1.9e-14 53.6 0.1 2 43 345 387 344 388 0.94
Sequence Information
- Coding Sequence
- ATGCTGTGTCAGGAAATGCCGGGCTACGGATGTTACAAATTTAAACGCGAGCCGGCATCCGAAGGCGACGACAGCAGCTCACAATCTGCTCATGACATCTTCTACCATCAGTCCACCCCGCTGCCGGCTGCCGTGAAGGTGGAAGCGGCCGAGCAAGATGCTTCCTCGCAAATTCTGCATCACTTGCAGGTGGGTGTGGGTCTGGAGCTGTGCCCGCCCGCACCCGCCGCGCCGGCCGCCACGCCGGTGCACGCGCGCCGCACGCCGCACGACACGCCCGCCTCGCCGCGCTCACCGCACGCCGCTCACTGCTTCGAGACCCTCGAGCCCGCGCGCGCCCACACCGGCACAACACTCCTAGATCGTCATCTGAGGTTGATCGAGGACGCCGCGGAGCCCGACCTCATGCCTCTGCTGTCCGTCAAGGATGAACCGCTCTCGGAGGGGGAGCAGCAGCTGCTGAGCGACGAGGCGAGCTCGTGCGGCGGTAGCAGCGAGGGCGCCGAGGCTCGCGGCGGGGAGAGCCCGCCCGGCCCGCGCGCCTGGGGCCCGCGCGACATGCAGCGCGCGCTGCAGGCCCTGCGCGACCGCCGCATGACCCTCACCAAGGCTTCTGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCACGGCGGATGGGCATCGACACGCCGAAGCGCGAGGCGACAGCGCGCAGCTGGGGCGAGGCGGAGCTGCTGGCCGCGCTGGCCGCCCTGCGCGCCGGCACGCTCTCCGCCAACAAGGCTAGCAAGGCATACGGCATCCCGAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCAGACTGGCGGCGCCGTTCAACGCGGCACCGACGCGCTGGCGCCGCGGCGACCTGCAGCGCGCGCTCGCCGCCATCCGGTGCGGCGCCGCGTCAGTGCAGCGCGCCGCCGCGCAGTACGGCATCCCCTCCGGCACGCTGTACGGCCGCTGCAAGAGAGAGGGCATCGAGTTGTCCCGCGCCAACCCCACGCCCTGGTCCGAGCACGCCATGGGGGAGGCGCTGGAGGCCGTCAGAGTGGGTCAGATGTCTATAAATCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCACTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGTCGCAGTGCCTACAGTACCAACAGTCGGACACACGGAACAATTACGAAGCAGATCAAGAGATGCAGGCGAGGCAGGAGTCGCTGGCGCAGGAGCAGGTGGAGGTGCCGTACAGCCAGCTAGTGGGCGAAGCGCACGGCGTGCTGACTCACTGGCAGGACTGCGCCCCCGCTCTGCTCCACGCGCACGGCTGCAGCGGACTCGCCTACAGTTGA
- Protein Sequence
- MLCQEMPGYGCYKFKREPASEGDDSSSQSAHDIFYHQSTPLPAAVKVEAAEQDASSQILHHLQVGVGLELCPPAPAAPAATPVHARRTPHDTPASPRSPHAAHCFETLEPARAHTGTTLLDRHLRLIEDAAEPDLMPLLSVKDEPLSEGEQQLLSDEASSCGGSSEGAEARGGESPPGPRAWGPRDMQRALQALRDRRMTLTKASATYGIPSTTLWQRARRMGIDTPKREATARSWGEAELLAALAALRAGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTRWRRGDLQRALAAIRCGAASVQRAAAQYGIPSGTLYGRCKREGIELSRANPTPWSEHAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSQCLQYQQSDTRNNYEADQEMQARQESLAQEQVEVPYSQLVGEAHGVLTHWQDCAPALLHAHGCSGLAYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01144475; iTF_01149520; iTF_01142331; iTF_01145215;
- 90% Identity
- iTF_01144475;
- 80% Identity
- -