Pmac009165.1
Basic Information
- Insect
- Papilio machaon
- Gene Symbol
- -
- Assembly
- GCA_001298355.1
- Location
- NW:586399-590344[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-10 1.9e-07 30.3 0.0 3 39 244 280 242 285 0.88 2 4 3.4e-12 4.2e-09 35.6 0.3 2 39 297 334 296 337 0.93 3 4 4.4e-15 5.5e-12 44.8 0.1 2 45 352 396 351 396 0.96 4 4 9.7e-18 1.2e-14 53.3 0.1 2 43 404 446 403 447 0.94
Sequence Information
- Coding Sequence
- ATGCGCCACGCGGCGACGCAGAGGCGCCGCCGCGTGGCGGATTCACTTTCATTTGCGACATCCCGTCTCGCGAAGGTCAGCGTGAAGCGCGCCAGGAGCAGTAAACGCGGCCGTAGCGCGCCCGCCCGGGCCGGCCTCCGCCCGCCGACTACCACTAGAATGCTGTGTCAGGAAATGCCGGGCTACGgatgttacaaatttaaacgCGAGCCGGCGTCCGAAGGCGACGACAGCAGCTCACAATCTGCTCATGACATCTTCTACCATCAGCGAGTGCTCATGTTGCAGGCCACCCCGCTGCCGGCTGCCGTGAAGGTGGAAGCGACCGAGCAAGATGCTTCCTCGCAAATTCTGCATCACTTGCAGGTGGGTGTGGGTCTGGAGCTGTGcccgcccgcgcccgccgcgccggCCGCCACGCCGGTGCACGCGCGCCGCACGCCGCACGACACGCCCGCCTCCCCGCGCTCACCGCACGCCGCTCACTGCTTCGAGACCCTCGAGCCCGCGCGCGCCCACACCGGCACAACACTCCTAGATCGTCATCTGAGGTTGATCGCTGATGCCGCGGAGCCCGACCTGATGCCTCTGCTGTCCGTCAAGGATGAACCGCTTTCGGAGGGGGAGCAGCAGATGCTGAGCGACGAGGCGAGCTCGTGCGGCGGTAGCAGCGAGGGCGCCGAGGCTCGCGGCGGGGACAGCCCGCCCGGCCCGCGCGCCTGGGGCCCGCGCGACATGCAGCGCGCGCTGCAGGCCCTGCGCGACCGCCGCATGACCCTCACCAAGGCTTCCGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCACGGCGGCTGGGCATCGACACGCCGAAGCGCGAGACGACAGCGCGCAGCTGGGGCGAGGCGGAGCTGCTGGCCGCGCTGGCCGCCCTGCGCGCCGGCACGCTCTCCGCCAACAAGGCCAGCAAGGCATACGGCATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCAGACTGGCGGCGCCGTTCAACGCGGCACCGACGCGCTGGCGCCGCGGCGACCTGCAGCGCGCGCTCGCCGCCATCCGCTGCGGCGCCGCGTCGGTGCAGCGCGCCGCCGCGCAGTACGGCATCCCCTCCGGCACGCTGTACGGCCGCTGCAAGAGAGAGGGCATCGAGTTGTCCCGCGCCAACCCCACGCCCTGGTCCGAGCACGCCATGGGGGAGGCGCTGGAGGCCGTCAGAGTGGGTCAGATGTCTATAAACCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGTCGCAGTGCCTACAGTACCAACAGTCGGACACACGGAACAATTACGAAGCAGATCAAGAGATGCAGACGAGGCAGGAGTCGCTGGCGCAGGAGCAGGTGGAGGTGCCGTACAGCCAGCTGGTGGGCGAGGCGCACGGCGTGCTGGCTCACTGGCAGGACTGCGCCCCCGGCCTGCTCCACGCGCACGGCTGCAGCGGACTCGCCTACAGTTGA
- Protein Sequence
- MRHAATQRRRRVADSLSFATSRLAKVSVKRARSSKRGRSAPARAGLRPPTTTRMLCQEMPGYGCYKFKREPASEGDDSSSQSAHDIFYHQRVLMLQATPLPAAVKVEATEQDASSQILHHLQVGVGLELCPPAPAAPAATPVHARRTPHDTPASPRSPHAAHCFETLEPARAHTGTTLLDRHLRLIADAAEPDLMPLLSVKDEPLSEGEQQMLSDEASSCGGSSEGAEARGGDSPPGPRAWGPRDMQRALQALRDRRMTLTKASATYGIPSTTLWQRARRLGIDTPKRETTARSWGEAELLAALAALRAGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTRWRRGDLQRALAAIRCGAASVQRAAAQYGIPSGTLYGRCKREGIELSRANPTPWSEHAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSQCLQYQQSDTRNNYEADQEMQTRQESLAQEQVEVPYSQLVGEAHGVLAHWQDCAPGLLHAHGCSGLAYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01148028;
- 90% Identity
- iTF_01148028;
- 80% Identity
- -