Pgig009373.1
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- -
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000004.1:284416-286845[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.8 7.6e+03 -3.1 0.0 31 39 37 45 36 47 0.78 2 5 5.9e-11 1.2e-07 31.5 0.0 3 39 180 216 178 221 0.88 3 5 7.9e-12 1.6e-08 34.3 0.2 4 39 235 270 232 273 0.93 4 5 7.6e-16 1.5e-12 47.1 0.1 2 45 288 332 287 332 0.96 5 5 1.6e-18 3.3e-15 55.7 0.0 1 41 339 380 339 383 0.95
Sequence Information
- Coding Sequence
- ATGTTGTATCAGGAGATGCCCGGCTACGGTGGTTACTCGGTGAGCCGCGAGCCGGCGTCCGAGCGCGATGTCAGTGCGCCGTCCGCAGGCGACTTCCTATACCATCAGTCCACCCTCCGGGCCGTCGTGAAGGAGGAAGCGGGCGAGGAGGATGCGGCCTCGCGTATTTTACATCACTGGCAGGCGGGTGTTGGGCTGGAGCTGTGCCCGCCGGCGCCCGCAGCGCCCGCTGCGACGCCGGTGCGTGCGCGCCGCACGCCGCACGTCGCTCCGCACTCGCCCCACGCTGCGCATTGCTTCGAGACCCTGGAGCCTGCCCGCGCGGCCACTGGCACGACCCTTCTGGACCGTCACCTGCGGCTGAGCGCGGGCGCCGCTGAGCCTGACCTCATGCCTCTGCTGCCCGTCAAGGATGAACCACTCTCGGACGGGGAGCAGCAGGTGTTGAGCGACGGAGCGAGCTCGTGCGGGGGCAGCAGCGAGGGCGCTGAGGCTCGCGGCATTGACAGCCCGCCGGGCTCTCGCGGCTGGGGCCCGCGCGATATGCAGCGGGCTCTGCAGGCTCTGCGCGACCGCCGCATGACACTCACCAAGGCGTCGGCGGCGTACGGCATTCCGTCGACGACGCTGTGGCAGCGCGCGAGGCGGCTGGGCATCGACACGCCGAAGCGCGAGGCGGCCGCGCGCAGCTGGGGCGAGCCGGAGCTGCGTGCCGCGCTGGCCGCCCTCCGCGCCGGCACGCTCTCCGCCAACAAAGCCAGCAAGGCTTACGGCATCCCCAGCAGCACGCTGTACAAGATCGCACGGCGTGAGGGCATCCGGCTGGCGGCTCCTTTCAACGCGGCGCCGACGCGCTGGCGCCGCGGCGACCTACAGCGCGCGCTGGCAGCCATACGCTGCGGCGCCGCGTCGGTGCAGCGCGCTGCGCAGCAATACGGCATCCCCAGCGGCACGCTGTACGGCAGGTGCAAGCGGGAGGGCATCGAGCTGTCCCGCTCCAACCCCACGCCCTGGTCCGAGGACGCCATGGGCGAGGCGCTGGAGGCCGTCAGGGTGGGTCAGATGTCGATAAACCAGGCGGCGATCCACTACAACCTGCCCTACTCCTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCCGCCGCAGTGCCTGCAGTACCGGCCGGTGGACACGCAGAACAGTTACGAAGCCGATCAGAACGTGCAGCCCGGACTGGAGTTGGAGCGCTACTGCACGCTGCCGCACGGGCCGGGCGGCGCGGAGGTCGCGGGCCAGGCCCCGTACAGCCGGCTGCTGGGAGAGGCGCACGGCGTGCTCGGCCACTGGCCGGACTGTGCCGGCGCGCACGGCGACGGCCTCGCCACCAGTTGA
- Protein Sequence
- MLYQEMPGYGGYSVSREPASERDVSAPSAGDFLYHQSTLRAVVKEEAGEEDAASRILHHWQAGVGLELCPPAPAAPAATPVRARRTPHVAPHSPHAAHCFETLEPARAATGTTLLDRHLRLSAGAAEPDLMPLLPVKDEPLSDGEQQVLSDGASSCGGSSEGAEARGIDSPPGSRGWGPRDMQRALQALRDRRMTLTKASAAYGIPSTTLWQRARRLGIDTPKREAAARSWGEPELRAALAALRAGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTRWRRGDLQRALAAIRCGAASVQRAAQQYGIPSGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYPPQCLQYRPVDTQNSYEADQNVQPGLELERYCTLPHGPGGAEVAGQAPYSRLLGEAHGVLGHWPDCAGAHGDGLATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01148028;
- 90% Identity
- -
- 80% Identity
- -