Pmem021557.1
Basic Information
- Insect
- Papilio memnon
- Gene Symbol
- -
- Assembly
- GCA_003118335.3
- Location
- JAOPJP010000004.1:305725-308435[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-10 2.7e-07 30.5 0.0 3 39 182 218 180 223 0.89 2 4 3.1e-12 7.9e-09 35.4 0.4 2 39 235 272 234 275 0.93 3 4 9.4e-14 2.4e-10 40.3 0.1 2 45 290 334 289 334 0.96 4 4 1.7e-16 4.2e-13 49.1 0.1 4 38 344 379 341 382 0.93
Sequence Information
- Coding Sequence
- ATGCCCGGTTACGGAAGTTACTTAGTAAAACGCGAGCCGTCGTCCGAGGGCGACGACAGCAGCTCACAATCTGCTCACGACTTCCTCTACCATCAGTCGACCGTCCTGCCGGCTGTGAAGGTAGAAGCGGCCGAGCACCTCGAGCAGGATGCTTCCTCACACGTTCTGCATCACTTGCAGTTGGGTGTGGGCTTGGAACTGTGTCCGCCCGCGCCCGCCGCGCCGGCCGCCACGCCGGTACGCGCGCGCCGCACGCCGCACGACGCGCCCGTCTCGCCGCGCTCGCCGCACGCCGCGCACTGCTTCGAGACTCTCGAGCCCGCGCGCGCCCACACAGGTACGACACTCCTCGATCGCCACCTGAGGCTGATTGCAAACACCGCGGAGCCCGACTTCATGTCTCTGCTAGACGTCAAGGATGAACCGCTCTCGGAGGGCGAGCAGCAGGTGGCGAGCGACGAGGCGAGCTCGTGTGGAGGCAGCAGCGAGGGCGCGGAGGCCGGCGGAGGCGGCAGCCCGCCCGGAGCGCGCGGCTGGGGCCCGCGCGACATGCAGCGCGCTCTGCAGGCTTTGCGCGACCACCGCATGACACTCACAAAGGCGTCGGCGACGTACGGCATCCCGTCGACGACGCTTTGGCAGCGCGCGCGGCGGCTCGGCATCGACACGCCGAAGCGCGAGGCGGCCGCGCGCAGCTGGGGCGAGGCCGAGCTGCGCGCCGCGCTGGCAGCCCTGCGCGCCGGCACGCTCTCCGCCAACAAGGCCAGCAAGGCCTACGGCATCCCGAGCAGCACGTTGTACAAGATAGCGCGGCGCGAGGGCATCCGCGTGGCGGCGCCGCTCCACGCGGCGCCGACGCGGTGGCGGCGCGGCGAGCTGCAGCGCGCGCTGGCAGCCATCCGCGGCGGCGCGGCGTCCGTGCAGCGCGCCGCCGCGCAGTTCGGCATCCCGCCCGGCACGCTGTACGGCCGCTGCCGGCGCGAGGGCATCGAGCTGTCGCGCGCCACGCCTGCGCCCTGGTCCGAGCGCAGCATGGCGCTGGCGCTCGACGCCGTCAGAGTGGGCCAGATGTCTATAAATCAGGCGGCGATTCACTACAACCTGCCGTACTCCTCGCTGTACGGCCGCTTCAAGCGGTGCCAGCGCCCGCCGCAGTGTCTGCAGCAGCAGCAGTCTGACACACAGAACAACTACGAAGTAGATCAGAACGTGCAGCCGAGTCAGGAGTCTTTGTGTTACTACTCGCTGGCGCAGGAGGCGCAGGCGCAGGCGCAGGTGCCGTACAGCCAGCTGGTGGGGGAGGCGCACGGCGTGCTGGGGGCGTGGCCGGAGTGCGGGGGCGGGGGCGGGGGCGGCAGCGAGCTCGCCACCAGTTGA
- Protein Sequence
- MPGYGSYLVKREPSSEGDDSSSQSAHDFLYHQSTVLPAVKVEAAEHLEQDASSHVLHHLQLGVGLELCPPAPAAPAATPVRARRTPHDAPVSPRSPHAAHCFETLEPARAHTGTTLLDRHLRLIANTAEPDFMSLLDVKDEPLSEGEQQVASDEASSCGGSSEGAEAGGGGSPPGARGWGPRDMQRALQALRDHRMTLTKASATYGIPSTTLWQRARRLGIDTPKREAAARSWGEAELRAALAALRAGTLSANKASKAYGIPSSTLYKIARREGIRVAAPLHAAPTRWRRGELQRALAAIRGGAASVQRAAAQFGIPPGTLYGRCRREGIELSRATPAPWSERSMALALDAVRVGQMSINQAAIHYNLPYSSLYGRFKRCQRPPQCLQQQQSDTQNNYEVDQNVQPSQESLCYYSLAQEAQAQAQVPYSQLVGEAHGVLGAWPECGGGGGGGSELATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01148028;
- 90% Identity
- -
- 80% Identity
- -