Pxut013968.1
Basic Information
- Insect
- Papilio xuthus
- Gene Symbol
- -
- Assembly
- GCA_000836235.1
- Location
- NW:285411-289927[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.7e-11 1.7e-07 30.5 0.0 3 39 178 214 176 219 0.88 2 4 2.1e-12 3.8e-09 35.8 0.3 2 39 231 268 230 271 0.93 3 4 7.5e-15 1.3e-11 43.7 0.0 2 45 286 330 285 330 0.96 4 4 4.3e-16 7.8e-13 47.6 0.1 3 41 339 378 337 380 0.93
Sequence Information
- Coding Sequence
- ATGCTGTGTCAGGAAATGCCCGGCTACGGAGGTTACGAATTTAAACGCGAGCCGGCGTCCGAGTGCGACGACAGTAGCTCACAATCTGCACATGACTTCTTCTACCATCAGTCCACCCCGCTGCTGGCCGCCGTGAAGGTGGACGCGGCCGAGCAAGATGTTTCCTCGCACGTTATGCATCACTTGCAGGTGGGTGTGGGTCTGGAGCTGTGCCCGCTCACACCCGCAGCGCCCGCCGCGACGCCGGTGCGCGCGCGCCGCACACAGCACGACGCGTCCGCCTCGCCCGCCTCGCCCCGCTCACCACACGCCGCGCACTGCTTCGAGACCCTCGAGCCCGCCCGCGCCGACACAGGCACTACACTTCTAGATCGTCACCTGAGGTTGATCGCGGACTCCGCGGAGCCCGACCTCATGCCTCTGCTGCCCGTCAAGGACGAACCGCTCTCGGAGGGTGAGCAGCAGGTGCCGAGCGACGAGACGAGCTCGTGCGGCGGGGACAGCCCGCCCGGCCCGCGCGCCTGGGGCCCGCGCGACATGCAGCGCGCGCTGCAGGCCCTGCGCGACCGCCGCATGACCCTCACCAAGGCGTCGGCGACTTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCGGCGGCTCGGCATCGACACGCCGAAGCGCGAGGCGGCCGCGCGCAGCTGGGGCGAGGCGGAGCTGCTGGCCGCGCTCGCCGCCCTGCGCGCCGGCACGCTCTCCGCCAACAAGGCCAGCAAGGCGTATGGTATCCCGAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGACGCGGTGGCGACGCGGCGACTTGCAGCGCGCGCTGGCCGCCATCCGGTGCGGCGCCGCGTCTGTGCAGCGCGCCGCGGCGCAGTTCGGCATCCCGTCCGGCACGCTGTACGGCCGCTGCAAGCGGGAGGGCATCGAGCTGTCGCGCGCCAACCCCACGCCCTGGTCCGAGCGCGCCATGGCCGAGGCGCTGGAGGCCGTCGGAGTGGGTCGGATGTCCATAAACCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCGGCCGCAGTGCGTGCAGTACCAACAGTCGGACGCACAGAATTACGAAGTAGATGAGCAGATGCAGCCGAGGCGGGAGTCGGCAGGTTGGTGTCCGGTGACGCAGGCGAGCTGCAGCGGGGCGGGGGAGGAGCGGGGCGAGGTGGTGTACAGCCAGCTGGTGGGCGAGGCGCACGGCGTGCTGGAGCACTGGCCGGACTGCGCCCCCGCGCTGCTCCACGCGCCCGGCTACAGCGGACTCGCCACCAGTTGA
- Protein Sequence
- MLCQEMPGYGGYEFKREPASECDDSSSQSAHDFFYHQSTPLLAAVKVDAAEQDVSSHVMHHLQVGVGLELCPLTPAAPAATPVRARRTQHDASASPASPRSPHAAHCFETLEPARADTGTTLLDRHLRLIADSAEPDLMPLLPVKDEPLSEGEQQVPSDETSSCGGDSPPGPRAWGPRDMQRALQALRDRRMTLTKASATYGIPSTTLWQRARRLGIDTPKREAAARSWGEAELLAALAALRAGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTRWRRGDLQRALAAIRCGAASVQRAAAQFGIPSGTLYGRCKREGIELSRANPTPWSERAMAEALEAVGVGRMSINQAAIHYNLPYSSLYGRFKRCKYRPQCVQYQQSDAQNYEVDEQMQPRRESAGWCPVTQASCSGAGEERGEVVYSQLVGEAHGVLEHWPDCAPALLHAPGYSGLATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01148028;
- 90% Identity
- -
- 80% Identity
- -