Psmy011833.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pachycephus smyrnensis
Gene Symbol
stc
Assembly
GCA_030142225.1
Location
JARQST010000621.1:514039-518490[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2 2e+04 -4.4 1.6 15 19 543 547 542 547 0.81
2 16 0.19 1.9e+03 -0.8 0.2 4 10 576 582 575 582 0.94
3 16 2.4e-06 0.025 14.8 11.3 4 18 593 607 591 608 0.94
4 16 2.2e-05 0.22 11.8 15.8 1 18 644 661 644 662 0.91
5 16 0.47 4.7e+03 -2.1 1.0 1 5 671 675 671 680 0.72
6 16 0.36 3.7e+03 -1.7 1.2 5 10 689 694 689 694 0.96
7 16 5.2e-10 5.3e-06 26.5 14.0 1 19 700 718 700 718 0.98
8 16 0.35 3.6e+03 -1.7 3.8 5 12 747 754 747 754 0.91
9 16 1.9e-05 0.19 11.9 16.5 4 18 765 779 758 780 0.86
10 16 1.6 1.6e+04 -3.8 2.0 5 10 809 814 809 814 0.93
11 16 0.0072 73 3.7 10.7 1 11 820 830 820 842 0.88
12 16 7.1e-11 7.2e-07 29.3 14.0 1 19 847 865 847 865 0.98
13 16 1.4 1.5e+04 -3.7 0.5 6 10 894 898 893 899 0.70
14 16 2 2e+04 -4.8 7.4 10 19 912 922 901 922 0.82
15 16 6.9e-07 0.007 16.5 13.8 1 16 958 973 958 984 0.84
16 16 7.6e-06 0.077 13.2 13.7 1 19 990 1009 990 1009 0.97

Sequence Information

Coding Sequence
ATGGCCACTTGGGATGGGTCGTACTATGAACCTGATGATCCGAACTACTATCCGTACTCCACTCGTGGTGATGTAGGCTCTGCGGATCAAACATGGGGTTACTATCcgggaaataatttttctcgttcaagAGGTAATCCTTATACTTCGAATGGGTCTGGTGCTTTCCATCAGAACGGAGCTGTGGCCTTTCAACAAACTAGTGGAACGAATATTCCACCGGTTCAACAAAACGTAGTACCATTGCCTGTCTATCAAGATCAACAAATACCGTCTCTTCTGGAAAATGTTAATCCCCAGTGTTTCTTTGAGAATAATAGAGTGCAACCACAGCTTCCACCGTTTAATTACAAAAGTAGTAACTATGGAGGATGGAGTAAGAATGATAATACTAACCCTAAATTCCCAGGGCAAGCAAAGAATTCATATCCAAATATAGCAGAGTATTCAAATCTGCATGTCACTGCCGGTGAATTTATACCAAACAGTGCAAAGCCAAGTTATTCAGAAGCACCAATTGTTAATGTAAATAGTGGAGGGAATCAAACTAATATACAATGCGAAACTACAGAAACGCAACGTGGAAATCCTACCCCCGTGGCAGAAGCAGGACCATCGAACGTCTTCTTTGcagataataaaaacagaCGTAATGATAGGCGATTTGATAACAAAAAGAGTAACAATTACAGGCAACGCGAACCACAAGATCAACAACATAATCAGAATGGCTCCTATAGGAATTCTTACAAGAATCAAAATCCTAAGAACTATGGCAAGTTTCAAAATGATAGATATAACAATGGTAGACAATATTCCGAtggtaataaatattcctCTGGATGGAGGGacaatgagagaaaaaagcagAATGTAGATCAATCAGCTTCTAATACCACCGATGGAGCTAGAGATAATTTTGGAACAGCCTCGCATCcaaaggatgaagaaaaacaatacaCTAATGGAAAGTCAAATAAGAACGGTACTAAAGCCTCGCCTTATAATGACTCCCTGTCTCATCAATATAAACAAGAGAATTCAAGACAACCTAGCAAGTCATCCAAGTACAATTATAACGCTAGTAACGAGCCCAGTTCGTCTAGTCACAATGCGGAGCAGCCTCAGTCCTGGATGAAGAATGGAAAGAAGTATTTCAGCGATGATCGTTCGGAAAGATATCGTGAGAGAAAAGAGCGCTACAGTGACAGATACGATGGTGGTcacagagagaaaagaaataattatcaggATTACGATGGGCATAAAAGTAATTATGATGTGGACGAGAAGAGTGACAGAAACAGAGATAAAGAGCGTAACAAGAATGGTGCCCGAGAGAACAAAGATAAGGACAATAAAAGTTGGAGGTCAAAGAATGAAACTAGCAGCCAGAGTGCTACACCAAAACGTAGTGGTAACAAGAAGCACGATACAGACGATGATGCCAGTCAAAGAGAAAGGTTGACGGATCAATTAAATAGAGGACAACTCGAATGCTTAGTATGCTGTGATCGTATAAAGCAAACAGATCATGTTTGGTCGTGTTCCAATTGTTATCATGTGTTGCACTTAAAGTGTACTAAGAAATGGGCCAAATCATCTCAAAGTGaaaATGGTTGGCGTTGTCCAGCCTGTCAGAATGTAACATCTGTGATACCAGAAGAATATTACTGCTTCTGCGGAAAGGCAAAGACGCCAGAATGgaatcgtcgcgacgtcgctcATTCCTGTGGCGACGTTTGTGCACGTATGCGAGCAAACACCAACTGTGTTCACAAGTGTACTTTACTCTGTCATCCTGGTCCTTGTCCTCTCTGTATCGCTATGGTGACAAAGTACTGTGGTTGCGGAAGGACGTCGCAGACACTCAAGTGCAGCACCGCGACGCTTCTGCTCTGCGAGGCCACTtgcgataaattattaaattgcgAGAAGCACACCTGCGAGAGAAAGTGTCACCATGGTAGCTGTGGGAATTGCGATAAAACCATACACCAAGAATGTTTCTGTGGCAAACATAGTCGCGAGGTCACCTGCGACGTCGATGTTCCACTTACGTATACGTGCGAGAACGTTTGCGAGAAACTTTTGGACTGTGGCAATCACAAGTGCAAGGCTCTTTGTCATCCTGGTCCTTGCGAATCTTGTTCCCTGAAACCGGAAGCTGTCACTCACTGCTGCTGCGGACAGACTCCTCTGACGGAGCAGAGAAAAAGCTGTTTAGACGAGATACCAACCTGCGAGAAGATCTGTTGCAAGCGTCTCAAGTGTGGCCAACcaaGCCATCCTCATACGTGCAAGTCAAAGTGCCACCAGGGCGATTGTCCGGAGTGCGAATTGATCACAAAGGTCAAGTGTCGCTGTGGCAACATGGACAAGGAAATTTCCTGCAAGGAACTAACAACAAAGGCCGACGATGCTCGCTGCGAGAAAAAGTGCACCAAGAAAAGATCCTGTGGGAGACATAAGTGCAATCAAATGTGCTGCATCGATATTGAGCATATCTGTCCACTGCCTTGCTCCAAGACATTAAGCTGCGGAAGGCACAAGTGTGAGCAGACTTGTCACAAAGgAAGGTGTCAGCCCTGCTGGAGAAGCAGCTTCGACGAACTGTTCTGCGAGTGTGGCGCTGCTGTTTTGTATCCTCCTATTCCTTGCGGCACAAGACGTCCCGCCTGCGACAGACCTTGTTCACGGCAGCACGCGTGCACGCACGAGGTGTTGCACAATTGTCACAGCGAAGCTACGTGTCCTCCGTGCACTGTGCTCACTCAGAAATGGTGTTACGGTAAACACGAGTTGCGCAAAGCCGTGCCGTGTCACGTGAATGAAATATCGTGTGGTTTATCATGCAACAAACCAATATCATGTGGACGGCATAAATGCATTACGCTTTGTCACACTGGACCTTGTGAAAAGGCAGGACAAGTGTGCACGCAGCCATGTACCATACCTAGGGATTTATGTGGACACATTTGTGCTTCTCCTTGTCACGATGGAAAGTGTCCTGATACGCCGTGTAAAGAAATGGTCAAGGTTACCTGTCAGTGCGGTCATAGAAGCATGACTCGAGCTTGTGCTAAGAATTCACGTGAATTCCAAAGAATAGCCAGTGGTATACTTGCTAGTAAAATGGCAGATATGCAGCTTGGTCATTCGGTGGACTTGGAAGAAGTTTTTGGGCAGGGTGCGAAGAAGCAGAATCAGTTGAAAACTTTAGAGTGTAATGACGAGTGTAAGGTCATCGAAAGGAACAGGAGATTGGCTCTGAGCTTGCAAATTGTCAATCCTGATCTTAGTGGCAAGCTTATGCCACGGTATAGTGACCTTATGAAACATTGGGCCAAGAAGGATCCTTTCTTCTGTCAAATGGTCCATGACAAATTGACAGAACTGGTTCAGCAGGCTAAGACGTCCAAGCACAAGTCTAGAAGTTATTCCTTCGAAAGTATGAATAGAGATAAGCGACACTTTGTTCATGAATACTGCGAACAGTTTGGCTGTGAAAGTCAAGCTTACGATCAGGAACCGAAGAGGAATGTTGTAGCTACTGCTGTCAAGGATAAGTGTTGGATGCCGAGTCTAAGTTTATTAGAATTAGTACAAAGGGAAAGTGGTCAAAGGAAGGTACCAGGCCCTATGCTCAATACTTCAAAAGCTAACAGCTCTCTGAGAAATGTCGAAGTTCTCCCCTTGCCCGCTAAGAAAGGTCACAAACTCGTGCCTGTACCATCGACTTCAAAGTCACCGGAAAACGTGATAGATTATTTCGACTATCAAGGTTAA
Protein Sequence
MATWDGSYYEPDDPNYYPYSTRGDVGSADQTWGYYPGNNFSRSRGNPYTSNGSGAFHQNGAVAFQQTSGTNIPPVQQNVVPLPVYQDQQIPSLLENVNPQCFFENNRVQPQLPPFNYKSSNYGGWSKNDNTNPKFPGQAKNSYPNIAEYSNLHVTAGEFIPNSAKPSYSEAPIVNVNSGGNQTNIQCETTETQRGNPTPVAEAGPSNVFFADNKNRRNDRRFDNKKSNNYRQREPQDQQHNQNGSYRNSYKNQNPKNYGKFQNDRYNNGRQYSDGNKYSSGWRDNERKKQNVDQSASNTTDGARDNFGTASHPKDEEKQYTNGKSNKNGTKASPYNDSLSHQYKQENSRQPSKSSKYNYNASNEPSSSSHNAEQPQSWMKNGKKYFSDDRSERYRERKERYSDRYDGGHREKRNNYQDYDGHKSNYDVDEKSDRNRDKERNKNGARENKDKDNKSWRSKNETSSQSATPKRSGNKKHDTDDDASQRERLTDQLNRGQLECLVCCDRIKQTDHVWSCSNCYHVLHLKCTKKWAKSSQSENGWRCPACQNVTSVIPEEYYCFCGKAKTPEWNRRDVAHSCGDVCARMRANTNCVHKCTLLCHPGPCPLCIAMVTKYCGCGRTSQTLKCSTATLLLCEATCDKLLNCEKHTCERKCHHGSCGNCDKTIHQECFCGKHSREVTCDVDVPLTYTCENVCEKLLDCGNHKCKALCHPGPCESCSLKPEAVTHCCCGQTPLTEQRKSCLDEIPTCEKICCKRLKCGQPSHPHTCKSKCHQGDCPECELITKVKCRCGNMDKEISCKELTTKADDARCEKKCTKKRSCGRHKCNQMCCIDIEHICPLPCSKTLSCGRHKCEQTCHKGRCQPCWRSSFDELFCECGAAVLYPPIPCGTRRPACDRPCSRQHACTHEVLHNCHSEATCPPCTVLTQKWCYGKHELRKAVPCHVNEISCGLSCNKPISCGRHKCITLCHTGPCEKAGQVCTQPCTIPRDLCGHICASPCHDGKCPDTPCKEMVKVTCQCGHRSMTRACAKNSREFQRIASGILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKVIERNRRLALSLQIVNPDLSGKLMPRYSDLMKHWAKKDPFFCQMVHDKLTELVQQAKTSKHKSRSYSFESMNRDKRHFVHEYCEQFGCESQAYDQEPKRNVVATAVKDKCWMPSLSLLELVQRESGQRKVPGPMLNTSKANSSLRNVEVLPLPAKKGHKLVPVPSTSKSPENVIDYFDYQG