Basic Information

Gene Symbol
stc
Assembly
GCA_030142355.1
Location
JARQSY010000809.1:377531-381840[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 2 2.4e+04 -4.2 1.6 15 19 454 458 453 458 0.81
2 17 0.16 1.9e+03 -0.6 0.1 4 10 487 493 486 494 0.94
3 17 2.2e-06 0.027 14.9 11.3 4 18 504 518 502 519 0.94
4 17 2 2.4e+04 -4.1 0.4 6 10 545 549 545 550 0.89
5 17 4.1e-07 0.0048 17.3 16.8 1 18 555 572 555 573 0.97
6 17 0.42 5e+03 -1.9 1.3 1 10 582 591 582 591 0.73
7 17 0.56 6.6e+03 -2.3 0.9 5 10 600 605 600 605 0.95
8 17 4.8e-10 5.7e-06 26.6 14.0 1 19 611 629 611 629 0.98
9 17 0.33 3.9e+03 -1.6 3.8 5 12 658 665 658 665 0.91
10 17 4.4e-06 0.053 14.0 16.2 4 18 676 690 669 691 0.86
11 17 2 2.4e+04 -4.6 1.6 5 10 720 725 720 725 0.90
12 17 0.0078 92 3.6 11.0 1 11 731 741 731 753 0.88
13 17 6.5e-11 7.7e-07 29.4 14.0 1 19 758 776 758 776 0.98
14 17 1.3 1.6e+04 -3.5 0.5 6 10 805 809 804 810 0.70
15 17 2 2.4e+04 -4.8 7.6 10 19 823 833 812 833 0.81
16 17 1.1e-06 0.013 15.9 14.3 1 16 869 884 869 895 0.85
17 17 7.9e-06 0.093 13.2 14.2 1 19 901 920 901 920 0.97

Sequence Information

Coding Sequence
ATGGCCACTTGGGATGGTTCGTACTACGAACCTGATGATCCCAACTATCATCCATACTCCAATCATGGTGATGCAGGCCCTGGAGATCAAACATGGGGTTACTATGCTGGAAATAATTTGTCTCGTGCAAGAGGTAATCTTTATACTTCGAGCGGGTCTAGTGCTTTTGATCAGAACAGAGCTGTACCCTTTCAACAAACCAGTAGAACCAACGTTCCACCGGTTCAACAAAATGTAGCACCGTTGTCTGTCTATCAAGAGCAACCAATACCCTCACTTCTGGAAAATGTTAATCAGTGTTTCTTTGAGAATAATAGAGTACAACCACATCTTCCATCGTTCAATTATAAAAGTAGTAACTATGGAGGATGGAGTAAGAACGATAATACTGATTCTAAGTACCCAGGACAAGTGAAGAATTCATATCCAAATATAGCAGAGTATTCAAATCTACATGTTACTGCTGGTGAATTTATACCAAACAGTGCAAAACCAAGTTATTCAGAAGCACCAATTGCCAGTCTAAATAGTGCAGGGAATCAAACTAACGCACAATGCGAAGCTACAGAAATGCATCATGGAAATGCTACTGCCACGATAGAAGCAGGACCATCTAATGTCTtcttcaacaaaaaaaatagcaattaTAGGCAACCCTCAATGTcgaaggatgaagaaaaacaatacaCTAATGGAAAGCTAAATAAGAACGGTACTAAAGGCTTGCCTTACAATGACTCCCTGTCTTATCAATATAAACAAGAGAGTTCAAGACAACCTGGCAAATTACCCAAGTACAATTATAACGGTACTATCAACGAGCCCAGTTCGTCCAGTCACAATTCAGAGCAACCTCAGTCCTGgataaagaatggaaaaaagtaCTTCAGCGATGATCGTCCTGAAAGGTATCGTGAGAGAAGAGAACGCTACAGTGACAGATACGATAGTGGtcagagagagaagaggaataATTACCAGGATTATGATGgacacaaaaataattatgatgtGAGCAGCGAGAGGAGTGAAAGAAACAGAGATAAAGAGCGTAACAAGAATAGTGCCCGAGAGAACAAAGATAAAGACAGTGAAAGTTGGAGGTCAAAGAATGAAACTAGCAGCAGGAGTGGTACTCCAAAACGTAGTGGCAACAAGAAATACGATACAGACGATGATGCCAGTCAAAGGGAAAGGTTAACAGATCAATTAAATAGAGGACAACTCGAATGCCTAGTATGTTGTGATCGTATAAAGCAAACAGATCATGTTTGGTCGTGTTCCAATTGTTATCATGTATTGCATTTAAAGTGCACTAAGAAATGGGCCAAATCGTCGCAGAGTGaaaatggTTGGCGTTGTCCAGCCTGTCAGAATGTAACATCTGTGATAccagaagaatatttttgcttcTGCGGAAAGGGTAAGACGCCAGAATGGAATCGTCGTGAGGTCGCTCATTCCTGTGGGGACGTCTGCGGACGTATGCGAGCAAATACCAACTGTGTTCACAAATGTACTTTACTTTGTCATCCTGGTCCTTGTCCTTTATGTATCGCTATGGTAACAAAGTACTGTGGTTGCGGAAGGACTTCGCAAACACTCAAGTGTAGCACCGCGACGCTTTTGCACTGCGAGGCCACTTGcggtaaattattaaattgcgGGAAACACACTTGTGAAAAAAAGTGTCACCACGGCAGCTGTGAAAAGTGCGATAAAACCATACACCAAGAATGTTTCTGTGGCAAACATAATCGTGAGGTTACTTGCGACGTCGATGTTCCTTCTAAGTATACATGCGAGAACATTTGTGAGAAACTCTTAGACTGTGGCAATCACAAGTGCAAGGCTCTTTGCCATCCTGGACCTTGCGAATCTTGTTCCCTGAAACCGGAAGCCGTCACTCATTGCTGCTGCGGACAGACTCCCTTGACGGAGCAGAGAAAAAGCTGCTTAGATGAAATACCAACGTGCGAGAAGATCTGTTGCAAGCGTCTAAAGTGCGGCCAACCAAGCCATCCTCATACATGCAAGTCAAAGTGCCACGAGGGTGATTGTCCGGAGTGCGAATTGATCACAAAGGTAAAATGTCGCTGTGGCAACATGGACAAGGAAATTCCTTGCAAGGAACTAACGACAAAGGCCGATGATGCTCGTTGCGAGAAAAGGTGCACCAAGAAAAGATCCTGTGGCCGACATAAGTGTAATCAAATGTGCTGCATCGATATTGAGCATATCTGCCCATTACCTTGTTCAAAAACATTAAGCTGCGGAAGGCATAAGTGTGAGCAGACTTGCCATAAAGgaaGGTGCCAGCCCTGCTGGAGAAGCAGTTTTGATGAACTGTTCTGCGAATGTGGTGCTGCTGTTTTATATCCTCCAATTCCTTGCGGCACGAGACGTCCCGCCTGTGACAGACCTTGTTCACGACAGCACGCGTGCTCGCACGAGGTGTTGCACAATTGTCACAGCGAAGCTACGTGTCCTCCGTGCACTGTGCTCACTCAAAATTGGTGTTACGGTAAGCACGAGTTGCGCAAAGCCGTGCCGTGTCATGTGAATGAAATATCGTGCGGTTTACCGTGCAACAAACCAATATCATGCGGACGACATAAGTGCATTACACTTTGTCACGCTGGACCTTGTGAAAAACCAGGACAAGTTTGTACGCAGCCATGTACCACACCTAGGGATTTATGTGGACACATTTGTGCTTCTCCTTGTCACGAGGGAAAATGTCCTGATACTCCATGTAAAGAAATGGTCAAGgTTACCTGCCAGTGCGGTCATAGAAGTATGACTAGAGCTTGTGTTGAGAATTCGCgcgaatttcaaagaatagCCAGTGGTATACTTGCCAGTAAAATGGCAGACATGCAACTTGGTCATTCGGTGGACTTGGAAGAAGTCTTTGGCCAGGGTGCGAAGAAGCAGAATCAGTTAAAAACTTTAGAGTGTAATGATGAGTGTAAGGTTATTGAAAGAAACAGGAAACTGGCTCTGAGCTTGCAAATTGTCAATCCTGATCTGAGTGGCAAGCTTATGCCACGGTATAGCGATCTCATGAAACATTGGGCCAAGAAGGATCCTTTCTTCTGTCAAATGGTCCATGATAAATTGACGGAACTAGTTCAGCTGGCTAAAACGTCTAAGCAGAAGTCAAGGAGTTATTCTTTTGAATGTATGAATCGAGATAAGCGACACTTTGTTCATGAATACTGCGAACAGTTTGGCTGCGAAAGTCAAGCTTATGATCAGGAACCGAAGAGGAATGTTGTTGCTACTGCTGTGAAGGATAagtGTTGGATGCCGAGTCTAAGTTTATTAGAATTAGTACAACGGGAAAGTGGTCAAAGGAAGGTACCAGGTCCTATGCTCAATACGTCAAAAGCTAACTGCTCTCTAAGAAATGTCGAAGTTCTCCCCTTGCCCGCTAAGAAAGGCCACAAACTCGTGTCGATGCCGTCAACTTCAAAGTCGAAGATTAGTCAAAGATGA
Protein Sequence
MATWDGSYYEPDDPNYHPYSNHGDAGPGDQTWGYYAGNNLSRARGNLYTSSGSSAFDQNRAVPFQQTSRTNVPPVQQNVAPLSVYQEQPIPSLLENVNQCFFENNRVQPHLPSFNYKSSNYGGWSKNDNTDSKYPGQVKNSYPNIAEYSNLHVTAGEFIPNSAKPSYSEAPIASLNSAGNQTNAQCEATEMHHGNATATIEAGPSNVFFNKKNSNYRQPSMSKDEEKQYTNGKLNKNGTKGLPYNDSLSYQYKQESSRQPGKLPKYNYNGTINEPSSSSHNSEQPQSWIKNGKKYFSDDRPERYRERRERYSDRYDSGQREKRNNYQDYDGHKNNYDVSSERSERNRDKERNKNSARENKDKDSESWRSKNETSSRSGTPKRSGNKKYDTDDDASQRERLTDQLNRGQLECLVCCDRIKQTDHVWSCSNCYHVLHLKCTKKWAKSSQSENGWRCPACQNVTSVIPEEYFCFCGKGKTPEWNRREVAHSCGDVCGRMRANTNCVHKCTLLCHPGPCPLCIAMVTKYCGCGRTSQTLKCSTATLLHCEATCGKLLNCGKHTCEKKCHHGSCEKCDKTIHQECFCGKHNREVTCDVDVPSKYTCENICEKLLDCGNHKCKALCHPGPCESCSLKPEAVTHCCCGQTPLTEQRKSCLDEIPTCEKICCKRLKCGQPSHPHTCKSKCHEGDCPECELITKVKCRCGNMDKEIPCKELTTKADDARCEKRCTKKRSCGRHKCNQMCCIDIEHICPLPCSKTLSCGRHKCEQTCHKGRCQPCWRSSFDELFCECGAAVLYPPIPCGTRRPACDRPCSRQHACSHEVLHNCHSEATCPPCTVLTQNWCYGKHELRKAVPCHVNEISCGLPCNKPISCGRHKCITLCHAGPCEKPGQVCTQPCTTPRDLCGHICASPCHEGKCPDTPCKEMVKVTCQCGHRSMTRACVENSREFQRIASGILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKVIERNRKLALSLQIVNPDLSGKLMPRYSDLMKHWAKKDPFFCQMVHDKLTELVQLAKTSKQKSRSYSFECMNRDKRHFVHEYCEQFGCESQAYDQEPKRNVVATAVKDKCWMPSLSLLELVQRESGQRKVPGPMLNTSKANCSLRNVEVLPLPAKKGHKLVSMPSTSKSKISQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01131248;
90% Identity
iTF_01473596;
80% Identity
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