Olig001684.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Osmia lignaria
Gene Symbol
-
Assembly
GCA_012274295.1
Location
NW:4243989-4248349[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 1.3 92 3.0 0.0 1 19 308 326 308 328 0.82
2 12 9.5 6.6e+02 0.3 0.2 6 20 336 350 330 352 0.86
3 12 1.9e-06 0.00013 21.4 4.2 2 23 397 418 396 418 0.97
4 12 5.3e-05 0.0037 16.8 0.2 1 23 424 446 424 446 0.98
5 12 1.8e-06 0.00012 21.5 0.9 1 23 452 474 452 474 0.98
6 12 1.2e-05 0.00083 18.9 3.3 1 23 480 502 480 502 0.98
7 12 9.4e-05 0.0066 16.0 1.0 1 23 508 530 508 530 0.98
8 12 3.1e-07 2.2e-05 23.8 0.5 1 23 538 560 538 560 0.98
9 12 0.0028 0.2 11.4 0.2 1 23 566 588 566 588 0.94
10 12 1.6e-05 0.0011 18.5 1.9 1 23 594 616 594 616 0.98
11 12 5e-05 0.0035 16.9 0.6 1 23 622 644 622 644 0.97
12 12 0.19 13 5.6 6.1 1 23 650 672 650 673 0.95

Sequence Information

Coding Sequence
ATGACTGATCAATTACCAAAAGTAGTGTGCGAGGAATGTGCTTATAAATTGGAccaattatttgattttcgtgaaaaatgtttacacACTGAAGGGATGTTTATGGAAATGCTAAAAGAAATTGCCAAGGGAGAAGTTGTTCGTATATCGAAGCAGGATTtagaagaagtagaagaaatgAATAGAATTCAAAGGAATATCGATAGAATAcagaataatattgaaaatgtacaaaatcATGTAAATTCtcaagaaacagaagaaactGCTATACATACCATGCAAGTCATGGATGAAATAGACTTAGCAGGTGGTGAACAGGTTGTCACGCAAGAAGAAATTGGACAACAGGATACCGATATTGAAGTCACAGGTATCGACTGTTTAGATGGAGATACTGTCAGAATGGTGGATGAACATATACGAGAAGTTTCTAATCACCAGATAGCAATGCATCTGGAGGGAGATATGACTGTAGTTGGAAACTTAACAGTTAGTGGTCACTTGAGTCAGTTaggaataaattatgtaacttCAATAAATCCTGAGGATCAAAGTCGTGAACAAATAGTACATTATTGTGATAATGTAAAATACGAATCTGTACCAATTAAACAAGAGTATCATAGGTTGCACGATAGATTGACTACAGAAAATCCTACGAATATacttgaaaataatGTACCACATGAAAGTTTTTCTTCTGCTCAACAAGAGACTACAAATGATCTGGAAGAATCGCGTATAGTTGAAAGTGAAACTCCCGTACATACAGCTTCTCAAACAAATACTTTGGCATCAACAAGTCAAGTAACAGCGGGAAATCCCGAAATTTTAGTTGAATATACAAAAGAAGCGAAAAATGCATTATTAGAAACGACATTAAATAATCCTACCGTTGACGAAACAGGTTCACACTGGTACGTGTGCCCATTTTGTAACGAAGCAACGTTAGGATCGAGTAATATGATAGCACATTTTGAACAGTACTTTTGTTACTGTCCCTGTGAATTGTATTTTACAAGTGTGGATGCGCTAAATGTACATAAAGAGGGATGTgatgtacataaaaataaggtaGTCAGTAATGGAAAAGAGGTCACAGAACCAGAATTAACGCCTTCACAAAACGATACGAGTATAGAGGAGAAAAAGCAAGCAACAATGAGACAAAAGTGGACTCCAAAAGTTTGTACCCACTGTGGCAAACAATATAGGACGAATTATAAATTGCAAGAGCACATGAGAAAACATACTGGTGAAAAACCTTTTCAGTGCGTCACTTGTGAAAAAGCATTTCGTAGTAAAATAGGGCTTGCACAACATACGGCCACGCATACAGGACAATTTGATTACAATTGTTCCACGTGTGGCAAAGGTTTCCAGTCTAAAAGCTATCTTGTCCTTCACCAAAGAGTACATTCAGATTTAAAACCCTTCCCGTGTAATACATGCGGACAACATTTTAAAACGAAACAATCCTTGTTAGATCATCAGAACAGGCATCTCGGTGTTAAACCTTATGTCTGTGAGATATGTGGTAGAGGTTTTATAACTAAAGGACTCTGTAAAAGTCATCAAAAAATACATTCAGGCATGGATAACCGGCAGTATCCATGCGTGGtatgtaataaaatgtttgttaGTAAAAGTTACCTTAACACGCATCTACGTATTCATACTGGTGAGAAACCTTATTTATGTGAAGTTTGTGGTAAAGGATTTTTAACTCGAGTTGATCTCAAAATTCATTCAACCATGCACACTGGAGAGAAGAGTTTTAAATGCGACATGTGTGGAAAAGTGTTTGCCAGAAGAGCTGCGTTGAGGTGTCATAGAAGGTTGCATACAGGAGAACGACCTTATAGATGTGACGTGTGTGGTAAAACCTTTACACAATTCACTCCTATGGCTATCCATAAAAGATTACACACCGGGGAACGACCTTACGAATGCGATGCCTGTTCTAAGACCTTCGTGTCGAGATCAACAATGATGTGTCACAAAAAGAAACATCATAATACACCAACCGTGCAAAAGGACGATACGGTTCCTcgtcaaaatgaaataaaaaatatcctaCCAGCTGAAATTGTACTTCGAGATTCCCAAGAGGGAATTCAGATTACCGCCGATTGA
Protein Sequence
MTDQLPKVVCEECAYKLDQLFDFREKCLHTEGMFMEMLKEIAKGEVVRISKQDLEEVEEMNRIQRNIDRIQNNIENVQNHVNSQETEETAIHTMQVMDEIDLAGGEQVVTQEEIGQQDTDIEVTGIDCLDGDTVRMVDEHIREVSNHQIAMHLEGDMTVVGNLTVSGHLSQLGINYVTSINPEDQSREQIVHYCDNVKYESVPIKQEYHRLHDRLTTENPTNILENNVPHESFSSAQQETTNDLEESRIVESETPVHTASQTNTLASTSQVTAGNPEILVEYTKEAKNALLETTLNNPTVDETGSHWYVCPFCNEATLGSSNMIAHFEQYFCYCPCELYFTSVDALNVHKEGCDVHKNKVVSNGKEVTEPELTPSQNDTSIEEKKQATMRQKWTPKVCTHCGKQYRTNYKLQEHMRKHTGEKPFQCVTCEKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQSKSYLVLHQRVHSDLKPFPCNTCGQHFKTKQSLLDHQNRHLGVKPYVCEICGRGFITKGLCKSHQKIHSGMDNRQYPCVVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDMCGKVFARRAALRCHRRLHTGERPYRCDVCGKTFTQFTPMAIHKRLHTGERPYECDACSKTFVSRSTMMCHKKKHHNTPTVQKDDTVPRQNEIKNILPAEIVLRDSQEGIQITAD