Basic Information

Insect: Osmia bicornis
Gene Symbol: -
Assembly: GCA_907164935.1
Location: NC:5556165-5559450[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4 2.5e+02 2.9 0.0 1 19 365 383 365 385 0.82

2 11 5.8e-06 0.00035 21.3 4.2 2 23 454 475 453 475 0.97

3 11 0.00016 0.0099 16.7 0.2 1 23 481 503 481 503 0.98

4 11 5.4e-06 0.00033 21.3 0.9 1 23 509 531 509 531 0.98

5 11 3.6e-05 0.0022 18.7 3.3 1 23 537 559 537 559 0.98

6 11 0.00029 0.018 15.9 1.0 1 23 565 587 565 587 0.98

7 11 9.5e-07 5.8e-05 23.7 0.5 1 23 595 617 595 617 0.98

8 11 0.0086 0.53 11.3 0.2 1 23 623 645 623 645 0.94

9 11 4.9e-05 0.003 18.3 1.9 1 23 651 673 651 673 0.98

10 11 0.00015 0.0093 16.8 0.6 1 23 679 701 679 701 0.97

11 11 0.58 36 5.5 6.1 1 23 707 729 707 730 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4	2.5e+02	2.9	0.0	1	19	365	383	365	385	0.82
2	11	5.8e-06	0.00035	21.3	4.2	2	23	454	475	453	475	0.97
3	11	0.00016	0.0099	16.7	0.2	1	23	481	503	481	503	0.98
4	11	5.4e-06	0.00033	21.3	0.9	1	23	509	531	509	531	0.98
5	11	3.6e-05	0.0022	18.7	3.3	1	23	537	559	537	559	0.98
6	11	0.00029	0.018	15.9	1.0	1	23	565	587	565	587	0.98
7	11	9.5e-07	5.8e-05	23.7	0.5	1	23	595	617	595	617	0.98
8	11	0.0086	0.53	11.3	0.2	1	23	623	645	623	645	0.94
9	11	4.9e-05	0.003	18.3	1.9	1	23	651	673	651	673	0.98
10	11	0.00015	0.0093	16.8	0.6	1	23	679	701	679	701	0.97
11	11	0.58	36	5.5	6.1	1	23	707	729	707	730	0.95

Sequence Information

Coding Sequence: ATGGCCGTCGTTGAGGAATTTGATTATTTATGTCGTTTATGTGCGACTAAAACGGGCATTCTAATGGGATTACCGATTTTCGAAGCCGGCGATCAAATGCGCAACATTGACAAGAAAATAGCCGCGTGTTTGCCAGTACAGGTAAAATCATGCGTAAAGATAGAGGTATCTATGACTGATCAATTACCAAAAGTAGTGTGCGAGGAATGTGCTTATAAATTGGACCAATTATTTGATTTTCGTGAAAAATGTTTACACACTGAAGGGATGTTTATGGAAATGCTAAAAGAAATTGCCAAGGGAGAAGTTGTTCGTATATCGAAGCAGGATttagaagaagtagaagaaatgAATAGAATTCAAAGGAATATCGATAGAATACAGAATAATATTGAAGATGTACAAAATCATGTAAATTCTCAAGAAACAGAAGAAACTGCTATACATACCATGCAAGTCATGGATGAAATAGATTTAGCAGGTGGTGAACAGGTTGTCACGCAAGAAGAAATTGGACCACAGGATACCGATATTGAAGTCACAGGTATCGACTGTTTAGATGGAGATACCGTCAGAATGGTGGATGAACATATACGAGAAGTTTCTAATCACCAGATAGCAATGCATCTGGAGGGAGATATGACTGTAGTTGGGAACTTAACAGTTAGCGGTCACTTGAGTCAGTTaggaataaattatgtaactTCAATAAATCCTGAGGATCAAAGTCGTGAACAAATAGTACATTATTGTGATAATGTAAAATACGAATCTGTACCAATTAAACAAGAGTATCATAGGTTGCACGATAGATTGACCACAGAAAATCCTACGAATGTACTTGAAAATAATGTACCGCATGAAAGTTTTTCTTCTGCTCAACAAGAGACTACAAATGATTTGGAAGAATCGCGTATAGTTGAAAGTGAAACTCCTGTACATACAGCTTCTCAAACAAATACTTTAGCATCAACAAGTCAAGTAACAGCGGGAAATTCCGAAATTTTAGTTGAATATACAAAAGAAGCGAAAAATGCATTATTAGAAACGACATTAAATAATCCTACCGTTGACGAAACAGGTTCACACTGGTACGTGTGCCCATTTTGTAACGAAGCAACGTTAGGATCGAGTAATATGATAGCACATTTTGAACAGTACTTTTGTTACTGTCCCTgtgaattatattttacaagtGTGGATGCGCTAAATGTACATAAAGAGGGATGTGatgtacataaaaataagGTAGTCAGTAATGGAAAAGAGGTCACAGAACCAGAATTAACGCCTTCACAAAACGATACTAGTATAGAGGAGAAAAAGCAAGCAACAATGAGACAAAAGTGGACTCCAAAAGTTTGTACCCACTGTGGCAAACAATATAGGACGAATTATAAATTGCAAGAGCACATGAGAAAACATACTGGTGAAAAACCTTTTCAATGCGTCACTTGTGAAAAAGCATTTCGTAGTAAAATAGGGCTTGCACAACATACGGCCACGCATACAGGACAATTTGATTACAATTGTTCCACGTGTGGCAAAGGTTTCCAGTCTAAAAGCTATCTTGTCCTTCACCAAAGAGTACATTCAGATTTAAAACCCTTCCCGTGTAATACATGCGGACAACATTTCAAAACGAAACAATCCTTGTTAGATCATCAGAACAGGCATCTCGGTGTTAAACCTTATGTCTGTGAGATATGTGGTAGAGGTTTTATAACTAAAGGACTCTGTAAAAGTCATCAAAAAATACATTCAGGCATGGATAACCGGCAGTATCCATGCGTGGTATGCAATAAAATGTTTGTTAGTAAAAGTTACCTTAACACGCATCTACGTATTCATACCGGTGAGAAACCTTATTTATGTGAAGTTTGTGGTAAAGGATTTTTAACTCGAGTTGATCTCAAAATTCATTCAACCATGCACACTGGAGAGAAAAGTTTTAAATGCGACATGTGTGGAAAAGTGTTTGCCAGAAGAGCTGCGTTGAGGTGTCATAGAAGGTTGCATACAGGAGAACGACCTTATAGATGTGACGTGTGTGGCAAAACGTTTACACAATTCACTCCTATGGCTATCCATAAAAGATTACACACCGGGGAACGACCTTACGAATGCGATGCCTGTTCTAAGACATTCGTGTCGAGATCAACAATGATGTGTCACAAAAAGAAACATCATAATACACCAACTGTGCAAAAGGACGATACGGTTCCTCGtcaaaacgaaataaaaaatatcctACCAGCTGAAATTGTACTTCGAGATTCCCAAGAGGGAATTCAGATTACCGCTGATTGA
Protein Sequence: MAVVEEFDYLCRLCATKTGILMGLPIFEAGDQMRNIDKKIAACLPVQVKSCVKIEVSMTDQLPKVVCEECAYKLDQLFDFREKCLHTEGMFMEMLKEIAKGEVVRISKQDLEEVEEMNRIQRNIDRIQNNIEDVQNHVNSQETEETAIHTMQVMDEIDLAGGEQVVTQEEIGPQDTDIEVTGIDCLDGDTVRMVDEHIREVSNHQIAMHLEGDMTVVGNLTVSGHLSQLGINYVTSINPEDQSREQIVHYCDNVKYESVPIKQEYHRLHDRLTTENPTNVLENNVPHESFSSAQQETTNDLEESRIVESETPVHTASQTNTLASTSQVTAGNSEILVEYTKEAKNALLETTLNNPTVDETGSHWYVCPFCNEATLGSSNMIAHFEQYFCYCPCELYFTSVDALNVHKEGCDVHKNKVVSNGKEVTEPELTPSQNDTSIEEKKQATMRQKWTPKVCTHCGKQYRTNYKLQEHMRKHTGEKPFQCVTCEKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQSKSYLVLHQRVHSDLKPFPCNTCGQHFKTKQSLLDHQNRHLGVKPYVCEICGRGFITKGLCKSHQKIHSGMDNRQYPCVVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDMCGKVFARRAALRCHRRLHTGERPYRCDVCGKTFTQFTPMAIHKRLHTGERPYECDACSKTFVSRSTMMCHKKKHHNTPTVQKDDTVPRQNEIKNILPAEIVLRDSQEGIQITAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00761134;
90% Identity: iTF_01123217;
80% Identity: -