Basic Information

Insect: Bombus opulentus
Gene Symbol: -
Assembly: GCA_034509555.1
Location: CM067411.1:3100608-3103360[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.3 5e+02 1.6 0.1 1 9 357 365 357 376 0.78

2 12 1.9 1.5e+02 3.2 1.6 1 20 380 399 380 401 0.88

3 12 3.2e-06 0.00025 21.4 1.9 3 23 447 467 446 467 0.98

4 12 0.0002 0.016 15.8 0.1 1 23 473 495 473 495 0.98

5 12 3.4e-06 0.00027 21.4 0.9 1 23 501 523 501 523 0.98

6 12 2.3e-05 0.0018 18.8 3.3 1 23 529 551 529 551 0.98

7 12 7.8e-05 0.0061 17.1 1.0 1 23 557 579 557 579 0.98

8 12 6e-07 4.7e-05 23.7 0.5 1 23 587 609 587 609 0.98

9 12 0.0054 0.43 11.3 0.2 1 23 615 637 615 637 0.94

10 12 3.1e-05 0.0024 18.3 1.9 1 23 643 665 643 665 0.98

11 12 9.5e-05 0.0075 16.8 0.6 1 23 671 693 671 693 0.97

12 12 0.026 2.1 9.1 5.3 1 23 699 721 699 722 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.3	5e+02	1.6	0.1	1	9	357	365	357	376	0.78
2	12	1.9	1.5e+02	3.2	1.6	1	20	380	399	380	401	0.88
3	12	3.2e-06	0.00025	21.4	1.9	3	23	447	467	446	467	0.98
4	12	0.0002	0.016	15.8	0.1	1	23	473	495	473	495	0.98
5	12	3.4e-06	0.00027	21.4	0.9	1	23	501	523	501	523	0.98
6	12	2.3e-05	0.0018	18.8	3.3	1	23	529	551	529	551	0.98
7	12	7.8e-05	0.0061	17.1	1.0	1	23	557	579	557	579	0.98
8	12	6e-07	4.7e-05	23.7	0.5	1	23	587	609	587	609	0.98
9	12	0.0054	0.43	11.3	0.2	1	23	615	637	615	637	0.94
10	12	3.1e-05	0.0024	18.3	1.9	1	23	643	665	643	665	0.98
11	12	9.5e-05	0.0075	16.8	0.6	1	23	671	693	671	693	0.97
12	12	0.026	2.1	9.1	5.3	1	23	699	721	699	722	0.95

Sequence Information

Coding Sequence: ATGGCCGTCGTCGAggaatttgattatttatgtCGTTTATGTGCGACCAAAACGGGTATCCTAATGGGATTACCGATCTTCGAAGCCGGCGATCAGATGCGCAACATTGACAAGAAAATAGCCGCATGTTTGCCAGTGCAGgTGTCTATGACTGATCAATTACCAAAAGTGGTATGCGAAGAGTGTGCTTATAAATTGGATCAGCTGTTTgattttcgtgaaaaatgtttacataCTGAGGCAGTATTCATGGAAATGTTGAAAGAAATTGCCAAGCAAGAGATTGTTCGTATATCAAAAAGGGATTtggaagaagtagaagaaatgAAGAGGATTCAGAGGAATATTGAcagaatacaaaataatatggaaaacGTACAAAATCATGTAACTCCCCAAGAAACAACAGAGCCTACTATACATACTATGCAAGTCATAGATGAAATAGATTTGGCAGCGGGTGAACAAGTTGTTACACAAGAAGAAATGGGACAACAAGATACAGATATTGAGGTTACTGGTATCGACTGTTTAGATGGAGATACAGCTAGAATGGTGGATGAACATATACGAGAAGTTTCTAATCATCAAATAGCAATGCATTTGGAAGGTGATATGACTGTAGTTGGAAATTTAACAGTGAGTGGTCATTTGAGTCAATTaggaataaattatgttacttCAATAAATCCTGAAGATCAAAATCGAGAATCAATTGTACATTATTGTGATAATGTAAAGTATGAATCAGTACCAATAAAACAAGAATATCATAGGTTGCGAGATAGATTAACCACAGAAGATCCTACAAATGTACTTGAAAATAATGTACCACATGAGAATTTTGCTCCTGCTCAACCAGAGACTGGTAGTGATATAGAAGAAACTCGTGTAGTTGAAAGTGAAACTCCTAGGCATACAACTTCTCAAACAAATACTATGGCATCAACAAGTCAAATAACAACTGGAAGTCCAGAAATTTTAGtagaatatacaaaaagaGCCAAACATGCATTATTAGAAACAGCATTAAATAATCCTACAGTTGATGAAACAGGTTCACATTGGTATGTGTGTCCATTTTGTAATGAAGCAACATTAGGTTCAAATAATATGATAGCACattttgaacaatatttttgcTGTTGCCCTTGtggtttatattttacaagtgtAGATGCCTTAAATGTACATAAGGAAAGATGtgatgtatataaaagtaaaacgatcgacaaagaaaaacaaatcaCAGAACCTGAATTAGTGTCTTCACAAGATGAagtaaatatagaagaaaaaaaacaaacaacaGTAAGGCAGAAATGGACTCCAAAAATTTGCACTCAATGTGGTAAACAGTACAGgacgaattataaattacaagaacATATGCGGAAACATACTGGTGAAAAGCCTTTTCAGTGTGTGACTTGTGAAAAAGCATTTCGTAGTAAAATTGGGCTTGCACAACATGCGGCTACACATACAGGGCAATATGATTACAATTGCTCCACATGTGGTAAAGGTTTTCAATCTAAAAGTTATCTTGTTCTTCATCAAAGAGTACATTCAGATTTAAAGCCTTTTCCATGCAACACTTGTGGACaacattttaaaacgaaacaatCATTATTAGATCATCAAAATAGACATCTTGGGGTCAAACCATATGTATGTGAAATTTGTGGCAAAGGTTTTATAACCAAAGGACTCTGTAAAAGTCATCAAAAAATACATTCGGGTATGGATAACCGTCAATATCCATGTGTGGTATGCAACAAAATGTTTGTTAGTAAAAGTTATCTGAACACTCATTTGCGCATTCACACAGGTGAAAAGCCGTATTTGTGTGAAGTTTGTGGTAAAGGATTTTTAACAAGAGTCGATCTTAAAATCCATTCAACAATGCACACGGGAGAAAAAAGCTTTAAATGCGATATGTGTGGAAAAGTATTCGCCAGAAGGGCAGCGTTAAGGTGTCATAGGAGATTGCACACCGGTGAACGGCCTTACAGATGCGATGTATGTGGAAAAACATTCACGCAGTTCACTCCTATGGCCATTCATAAAAGATTACATACTGGAGAGCGACCATATGAATGTGATGCATGTGGCAAAACATTTGTATCGAGATCAACCATGATGtgtcataaaaaaaaacaccATGGTACAGCACCCGTGCAAAAAGATGAACCAGTTCCTcgtcaaaatgaaataaagaatatcttaCCAGCAGAAATTGTACTCCGAGATTCCCAGGAAGGAATTCAAATTACTGCAGATTAA
Protein Sequence: MAVVEEFDYLCRLCATKTGILMGLPIFEAGDQMRNIDKKIAACLPVQVSMTDQLPKVVCEECAYKLDQLFDFREKCLHTEAVFMEMLKEIAKQEIVRISKRDLEEVEEMKRIQRNIDRIQNNMENVQNHVTPQETTEPTIHTMQVIDEIDLAAGEQVVTQEEMGQQDTDIEVTGIDCLDGDTARMVDEHIREVSNHQIAMHLEGDMTVVGNLTVSGHLSQLGINYVTSINPEDQNRESIVHYCDNVKYESVPIKQEYHRLRDRLTTEDPTNVLENNVPHENFAPAQPETGSDIEETRVVESETPRHTTSQTNTMASTSQITTGSPEILVEYTKRAKHALLETALNNPTVDETGSHWYVCPFCNEATLGSNNMIAHFEQYFCCCPCGLYFTSVDALNVHKERCDVYKSKTIDKEKQITEPELVSSQDEVNIEEKKQTTVRQKWTPKICTQCGKQYRTNYKLQEHMRKHTGEKPFQCVTCEKAFRSKIGLAQHAATHTGQYDYNCSTCGKGFQSKSYLVLHQRVHSDLKPFPCNTCGQHFKTKQSLLDHQNRHLGVKPYVCEICGKGFITKGLCKSHQKIHSGMDNRQYPCVVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDMCGKVFARRAALRCHRRLHTGERPYRCDVCGKTFTQFTPMAIHKRLHTGERPYECDACGKTFVSRSTMMCHKKKHHGTAPVQKDEPVPRQNEIKNILPAEIVLRDSQEGIQITAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00761134;
90% Identity: iTF_01123217;
80% Identity: -