Basic Information

Insect: Bombus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_014825975.1
Location: CM026164.1:3017117-3021045[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.1 4.6e+02 1.7 0.1 1 9 357 365 357 376 0.78

2 11 1.6 1.4e+02 3.3 1.6 1 20 380 399 380 401 0.88

3 11 2.2e-06 0.0002 21.7 2.3 2 23 446 467 445 467 0.97

4 11 0.00016 0.015 15.8 0.1 1 23 473 495 473 495 0.98

5 11 2.7e-06 0.00025 21.4 0.9 1 23 501 523 501 523 0.98

6 11 1.8e-05 0.0017 18.8 3.3 1 23 529 551 529 551 0.98

7 11 6.3e-05 0.0057 17.1 1.0 1 23 557 579 557 579 0.98

8 11 0.0044 0.39 11.3 0.2 1 23 589 611 589 611 0.94

9 11 2.5e-05 0.0022 18.4 1.9 1 23 617 639 617 639 0.98

10 11 7.7e-05 0.0069 16.9 0.6 1 23 645 667 645 667 0.97

11 11 0.021 1.9 9.2 5.3 1 23 673 695 673 696 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.1	4.6e+02	1.7	0.1	1	9	357	365	357	376	0.78
2	11	1.6	1.4e+02	3.3	1.6	1	20	380	399	380	401	0.88
3	11	2.2e-06	0.0002	21.7	2.3	2	23	446	467	445	467	0.97
4	11	0.00016	0.015	15.8	0.1	1	23	473	495	473	495	0.98
5	11	2.7e-06	0.00025	21.4	0.9	1	23	501	523	501	523	0.98
6	11	1.8e-05	0.0017	18.8	3.3	1	23	529	551	529	551	0.98
7	11	6.3e-05	0.0057	17.1	1.0	1	23	557	579	557	579	0.98
8	11	0.0044	0.39	11.3	0.2	1	23	589	611	589	611	0.94
9	11	2.5e-05	0.0022	18.4	1.9	1	23	617	639	617	639	0.98
10	11	7.7e-05	0.0069	16.9	0.6	1	23	645	667	645	667	0.97
11	11	0.021	1.9	9.2	5.3	1	23	673	695	673	696	0.95

Sequence Information

Coding Sequence: ATGGCCGTCGTTGAGGAATTTGATTATTTATGTCGTTTATGTGCGACCAAAACGGGTATTCTAATGGGATTACCGATCTTCGAAGCCGGCGATCAGATGCGCAACATTGACAAGAAAATAGCCGCATGTTTGCCAGTGCAGGTATCTATGACTGATCAATTACCAAAAGTGGTATGCGAAGAGTGTGCTTATAAATTGGATCAGCTGTTTGATTTTCGTGAAAAATGTTTACATACTGAGGCAGTATTCATGGAAATGTTAAAAGAAATTGCCAAGCAAGAGATTGTTCGTATATCAAAAAGGGATTTGGAAGAAGTAGAAGAAATGAAAAGGATTCAGAGGAATATTGACAGAATACAAAATAATATGGAGAACGTACAAAATCATGTAACTTCCCAAGAAACAGCTGAGCCTACTATACATACTATGCAAGTCATAGATGAAATAGATTTGGCAGCGGGTGAACAAGTTGTTACACAAGAAGAAATGGGACAACAAGATACAGATATTGAGGTTACTGGTATCGACTGTTTAGATGGAGATACAGCTAGAATGGTGGATGAACATATACGAGAAGTTTCTAATCATCAAATAGCAATGCATTTGGAGGGTGATATGACTGTAGTTGGAAATTTAACAGTGAGTGGTCATTTGAGTCAATTAGGAATAAATTATGTTACTTCAATAAATCCTGAAGATCAAAATCGAGAATCAATTGTACATTATTGTGATAATGTAAAGTATGAATCAGTACCAATAAAACAAGAATATCATAGGTTGCGAGATAGATTAACCACAGAAGATCCTACAAATGTACTTGAAAATAATGTACCACATGAGAATTTTGCTCCTGCTCAACCAGAGACTGGTAGTGATATAGAAGAAACACGTGTAGTTGAAAGTGAAACTCCTAGGCATACAACTTCTCAAACAAATACTATGGCATCAACAAGTCAAATAACAACTGGAAGTCCAGAAATTTTAGTAGAATATACAAAAAGAGCCAAACATGCATTATTAGAAACAGCATTAAATAATCCTACAGTTGATGAAACAGGTTCACACTGGTATGTGTGTCCATTTTGTAATGAAGCAACATTAGGTTCGAATAATATGATAGCACATTTTGAACAATATTTTTGCTGTTGTCCTTGTGGTTTATATTTTACAAGTGTAGATGCCTTAAATGTACATAAAGAAAGATGTGATGTATATAAAAGTAAAACGATCGACAAAGAAAAACAAATCACAGAACCTGAATTAGTGTCTTCTCAAGATGAAGTAAATATAGAGGAAAAAAAACAAACAACAGTAAGGCAGAAATGGACTCCAAAAGTTTGCACTCAATGTGGTAAACAATACAGGACGAATTATAAATTACAAGAACATATGCGGAAACATACTGGTGAAAAGCCTTTTCAGTGTGTGACTTGTGAAAAAGCATTTCGTAGTAAAATTGGGCTTGCACAACATGCGGCTACACATACAGGGCAATATGATTATAATTGCTCCACATGTGGTAAAGGTTTTCAATCTAAAAGTTATCTTGTTCTGCACCAAAGAGTACATTCAGATTTAAAGCCTTTTCCATGCAACACTTGTGGACAACATTTTAAAACGAAACAATCATTATTAGATCATCAAAATAGACATCTTGGGGTCAAACCATATGTATGTGAAATTTGTGGCAAAGGTTTTATAACCAAAGGACTCTGTAAAAGTCATCAAAAAATACACTCGGGTATGGATAATCGTGAAAAGCCGTATTTGTGTGAAGTTTGTGGTAAAGGATTTTTAACAAGAGTCGATCTTAAAATTCATTCAACAATGCACACGGGAGAAAAAAGCTTTAAATGCGATATGTGCGGAAAAGTATTCGCCAGAAGGGCAGCGTTAAGGTGTCATAGGAGATTGCACACCGGAGAACGGCCTTACAGATGCGATGTATGTGGTAAAACATTCACACAGTTCACTCCTATGGCCATTCATAAAAGATTACATACCGGAGAGCGACCATATGAATGTGATGCATGTGGCAAAACATTTGTATCGAGATCAACTATGATGTGTCATAAAAAAAAACACCATGGTACAGCACCCGTGCAAAAAGATGAACCAGTTCCTCGTCAAAATGAAATAAAAAATATCTTACCAGCAGAAATTGTACTCCGAGATTCCCAGGAAGGAATTCAAATTACCGCAGATTGA
Protein Sequence: MAVVEEFDYLCRLCATKTGILMGLPIFEAGDQMRNIDKKIAACLPVQVSMTDQLPKVVCEECAYKLDQLFDFREKCLHTEAVFMEMLKEIAKQEIVRISKRDLEEVEEMKRIQRNIDRIQNNMENVQNHVTSQETAEPTIHTMQVIDEIDLAAGEQVVTQEEMGQQDTDIEVTGIDCLDGDTARMVDEHIREVSNHQIAMHLEGDMTVVGNLTVSGHLSQLGINYVTSINPEDQNRESIVHYCDNVKYESVPIKQEYHRLRDRLTTEDPTNVLENNVPHENFAPAQPETGSDIEETRVVESETPRHTTSQTNTMASTSQITTGSPEILVEYTKRAKHALLETALNNPTVDETGSHWYVCPFCNEATLGSNNMIAHFEQYFCCCPCGLYFTSVDALNVHKERCDVYKSKTIDKEKQITEPELVSSQDEVNIEEKKQTTVRQKWTPKVCTQCGKQYRTNYKLQEHMRKHTGEKPFQCVTCEKAFRSKIGLAQHAATHTGQYDYNCSTCGKGFQSKSYLVLHQRVHSDLKPFPCNTCGQHFKTKQSLLDHQNRHLGVKPYVCEICGKGFITKGLCKSHQKIHSGMDNREKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDMCGKVFARRAALRCHRRLHTGERPYRCDVCGKTFTQFTPMAIHKRLHTGERPYECDACGKTFVSRSTMMCHKKKHHGTAPVQKDEPVPRQNEIKNILPAEIVLRDSQEGIQITAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00761134;
90% Identity: iTF_01123217;
80% Identity: -