Othy004600.2
Basic Information
- Insect
- Ormyrus thymus
- Gene Symbol
- retn
- Assembly
- GCA_035582935.1
- Location
- JAWWEM010000027.1:10094395-10099975[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-19 6.3e-16 59.5 0.0 17 89 6 76 1 76 0.92 2 2 2.6 1.1e+04 -2.2 0.0 5 21 248 267 246 315 0.57
Sequence Information
- Coding Sequence
- ATGGGAAGGGAGGGAAgcaCGCCGATCAACCGACTGCCGATAATGGCCAAATCGGTGCTCGACCTGTTCGAGCTCTACAATCTGGTCATCGCTCGCGGTGGCCTCGTCGACGTCATCAACAAGAAGCTCTGGCAGGAAATCATCAAGGGACTGCACCTCCCGTCGAGCATAACCTCCGCCGCCTTCACACTGCGCACCCAATACATGAAATACCTGTACCCGTACGAGTGCGAGAAGAAGCACCTGTCCTCGCCGGCGGAGCTGCAGGCGGCGATCGACGGCAACCGGCGCGAGGGTCGCCGCAGCAACTACGGCAactacggcggcggcggcggctccgtcGACGGCCTCGTGCGCAGTCCGCACACCCCGGGCTCCCTCGCCTCCCTCCACCCGCTCTCGCtggtcgcggcggcggccagcGGCCAGCACCAGGTCGGCCCGCAGGGCCTCGTCAACGGCAGCGCCGCCCACACGCCGATGCCCCACCATCCGCACCATCCGCAGCACCAGCAGGGCGGCGGCCTCGGCCAGCCGCTCAATGCAGGTGAGTTGATGGACTCGCTTCGCTTAGCAGCTCACAGTAGCGTGGCAGCTCATCTTTTCAATCTATCGCTCGCACCCCCGCCGGAGCAGAGTGCAGGCTCGTCGCTGCCGCCGTCCTTTGCGCAAGAGCGCTGCTCACACTCACCAGCTCTCTTTCCAGGCATGGCGCCGGAGATCGAGGTGCGCGTGGCCGAGTACATGAAGCAGCTCCAGCGGGAGATGGGCCGCAAGGCGACGGGCTCGCCGGTCCAGCACCACCTCCCGAGCAACCTGAGCCCCTCGCCGCCGCCCCAGGCCTCGGCGgtgcgctcgccgccgcccaCGTCCCGCGAGCAGGCCGCCTTCCTCGAGATGTCGCGCCTCACCCTCTGGAACATGTACAACAACAACATTCACCCCGGCCTCGGCTACGCTCAGGCCGCCTCGCCGCCCCACGGATCgcactcgccgccgccgcagccgatGAGCCCCGAGCCGCAGAAGGAGGCCCTGGACCTTGGATTGAGATCTTCCCCGAGCTCATCGTCGACTCGCCACAGTCCGCCGTCATCCAACGGCAGCATGAACATCAAGCGCGAGATGGACACCGTCGTCTCTCCCCACACTTCCACCGCCAACAAGAGGCTCTGCAGGGACGAGGACAGTCCCCCGAGAGACACTGTTCCTTCCGCTCTCCCGGGCACACACATCAAGATCGCAAACAGAGGCGACGGTCGCGATAACTCGCTCGTAGTCAGTATGGAACTCAACGGAGTCATGTACCAAGGTGTGCTCTTCGCCCAGACAGACGGCAGCGTTGCTGCTAACAACAACGAGAACAAGGCCTCGACTCGCAACGTCGTCTCGTGA
- Protein Sequence
- MGREGSTPINRLPIMAKSVLDLFELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKHLSSPAELQAAIDGNRREGRRSNYGNYGGGGGSVDGLVRSPHTPGSLASLHPLSLVAAAASGQHQVGPQGLVNGSAAHTPMPHHPHHPQHQQGGGLGQPLNAGELMDSLRLAAHSSVAAHLFNLSLAPPPEQSAGSSLPPSFAQERCSHSPALFPGMAPEIEVRVAEYMKQLQREMGRKATGSPVQHHLPSNLSPSPPPQASAVRSPPPTSREQAAFLEMSRLTLWNMYNNNIHPGLGYAQAASPPHGSHSPPPQPMSPEPQKEALDLGLRSSPSSSSTRHSPPSSNGSMNIKREMDTVVSPHTSTANKRLCRDEDSPPRDTVPSALPGTHIKIANRGDGRDNSLVVSMELNGVMYQGVLFAQTDGSVAANNNENKASTRNVVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01112367; iTF_01109893; iTF_01110710; iTF_01111544;
- 90% Identity
- -
- 80% Identity
- -