Onit025680.1
Basic Information
- Insect
- Ormyrus nitidulus
- Gene Symbol
- lov
- Assembly
- GCA_900474335.1
- Location
- UCOL01007772.1:3468-6039[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.9e-06 0.0062 17.0 0.0 1 43 208 250 208 252 0.89 2 4 6.3e-14 1e-10 41.9 0.0 3 42 260 299 258 302 0.86 3 4 0.0019 3 8.4 0.0 7 34 316 342 314 348 0.82 4 4 5.9e-13 9.6e-10 38.8 0.0 4 39 373 408 356 413 0.94
Sequence Information
- Coding Sequence
- ATGTCTGAGACGCCGGACTCGCAGATGCGTGTCGACTCCTCGTACTGCTTCAAGTGGGGCAATTATCACAATTACCTATCGGAGGTGGTGCGCCAACTATTGGAAGAAAGATGTATGGTCGACGTTACCCTTGTCGCCGGTGGCGAGCGTATTCAGGCGCACCGGATCGTTCTTGGCGCTTGCAGCACTCTATTTCAAgaaatcCTGAGCCAAGTTAATGATGAACATcctgttataattttaagtgatATTTCTGCACAAGATGTAAGATCAATTGTAGAATTTAGCTACAATGGAGAAGTTCGAATACCTGTGGAGAGTATCAACAACTTACTTGATGCTGCtcattctttgaaaatatgtGGTTTGATGGAGattgagGGTCTTGATGAATCTGAAGTATCAAatgataaagatttaattactgAAGAAGCTTACTTCCTGAGTGATTTAAGTCAAATAGAACCAGAAGAGGAATTGGACCAAATTATACAGGCAGATAGTTCTAACAATAATactagtaataataaaaaaactttagaaaaaaaaaatataaattcagaaaGCGAGACAGAAATTAAGAAACGGAAACGAAGGAAGAGTGTGTGTAAACGAGAGTACACTGATACTATGTTAGCGAATGCTATTGCTGATATAAGAGctggaaaaagtttattacagtcagcttttcataataatattccTCGATCTACTCTGTATATGCGAGCAAAATCTTTAGGAGTAACATTAAATCCTTCAAGAAGTGAATATACTCTTGAAGATATGAAAGCAGCAATTCAAGCAGTTCTTGagggTTCAAGTTTACAACAAGCTTCAGACTGTTATGGTATTCCAAAAACAGTATTATGGAGGCGAATACAAAAAGAGGGTTATCATACACCCAGACAAGATCAAAGGAAAACTTATGGTGCAGAGATAAGAGAAGCTGCTGTAAAAGCTCTAGAAAGAGGAGAAACTCTTACAAAAGTTGCAAATGAATATAAAataccaaaaacaactttatttcGAGACAAAGCACGTTTAGTAGACCAAGGAAAATTGCCTTCTTCATTTTGGAAAAAACGCAAAACTGATGGAGAAGATTTAAAACAGTCGCGTCTTGAAGAAGCAGTAGCTGCCTGTAAAAATGGCAAAATGTCTCAAGCTACAGCATCTGTTACTTATCAAATACCAAAAACTACTATTTGGAGGAGATTGCAGAAAGAGTCGcctaaaaaagatattttgccaaataaaaatcgatcaaAAAGTGAATCAAGCGCTGATTTAAATAACTCTGAGTCTCTGAAAAATGAGGAATTAAACGAAGGTGATTTCGAAGCATATTGTCCGgACGAAGGTGAAATGAGTATAACGTACATTGAAGAAAGTAACTTATCCGACAGTCCAGTTATCATTCTCGCAAGTGGTGATTCTGATGATATAAGTTTACAAAACAGGTCATTAGTAGTTGTTCAAGAGGGATCTgatgaaatgaaaaactttatatctTGTGGCTTAGATTTAGATGAAAACTCGGTCATGGTTGAAACTAGTTAA
- Protein Sequence
- MSETPDSQMRVDSSYCFKWGNYHNYLSEVVRQLLEERCMVDVTLVAGGERIQAHRIVLGACSTLFQEILSQVNDEHPVIILSDISAQDVRSIVEFSYNGEVRIPVESINNLLDAAHSLKICGLMEIEGLDESEVSNDKDLITEEAYFLSDLSQIEPEEELDQIIQADSSNNNTSNNKKTLEKKNINSESETEIKKRKRRKSVCKREYTDTMLANAIADIRAGKSLLQSAFHNNIPRSTLYMRAKSLGVTLNPSRSEYTLEDMKAAIQAVLEGSSLQQASDCYGIPKTVLWRRIQKEGYHTPRQDQRKTYGAEIREAAVKALERGETLTKVANEYKIPKTTLFRDKARLVDQGKLPSSFWKKRKTDGEDLKQSRLEEAVAACKNGKMSQATASVTYQIPKTTIWRRLQKESPKKDILPNKNRSKSESSADLNNSESLKNEELNEGDFEAYCPDEGEMSITYIEESNLSDSPVIILASGDSDDISLQNRSLVVVQEGSDEMKNFISCGLDLDENSVMVETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01113583; iTF_01113328; iTF_01111956; iTF_01111674; iTF_01111132; iTF_01110023; iTF_01112494; iTF_01112814; iTF_01110319;
- 90% Identity
- iTF_01113583; iTF_01113328; iTF_01111956; iTF_01111674; iTF_01111132;
- 80% Identity
- iTF_01111132;