Othy000860.1
Basic Information
- Insect
- Ormyrus thymus
- Gene Symbol
- lov
- Assembly
- GCA_035582935.1
- Location
- JAWWEM010000001.1:10467383-10469782[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.9e-06 0.012 16.2 0.0 3 43 210 250 208 252 0.87 2 4 1e-12 1.8e-09 38.1 0.0 3 42 260 299 258 302 0.85 3 4 0.0019 3.4 8.4 0.0 7 34 316 342 314 348 0.82 4 4 1.8e-12 3.1e-09 37.3 0.0 4 39 373 408 356 413 0.93
Sequence Information
- Coding Sequence
- ATGTCTGAGACGCCGGATTCGCAGATGCGTGTCGACTCCTCGTACTGCTTCAAGTGGGGCAATTATCACAATTACCTATCGGAGGTGGTGCGCCAACTACTGGAAGAAAGATGTATGGTCGACGTTACCCTTGTTGCCGGTGGCGAACGTATTCAGGCGCACCGAATCGTTCTTGGCGCCTGCAGCACTCTATTTCAGgaaattttGAGCCAAGTTAATGATGAACATcctgttataattttaagtgatATTTCTGCACAAGATGTAAGATCAATTGTAGAATTTAGCTACAATGGAGAAGTTCGAATACCTGTCGAGAGtatcaataatttacttgATGCTGCtcattctttgaaaatatgtGGTTTGATGGAGattgaGGGTCTTGATGAATCTGAAGTATCAAatgataaagatttaattaatgaagaaGCTTACTTCCTAAGTGATTTAAGTCAAATAGAACCAGAAGAGGAATTAGACCAAATTATAGAGGCAGATAGTTCTAACAATAATactagtaataataaaaaaatttcagaaaaaaaaaatagaaattcagAAAGTGAGACAGAAATTAGGAAACGGAAACGAAGGAAAAGTGTGTGTAAACGAGAGTATACTGATGCTATGTTAGCGAAAGCTATTGCTGATATAAAAGGTGgaaaatctttattagaaTCAGCTTCTCACAATAATATTCCTAGATCTACTCTGTATATGCGAGCAAAATCTTTAGGAATTACATTAAATCCTTCAAGAAGTGAATATACTCTTGAAGATATGAAAGGAGCAATTCAAGCAGTTCTTGaggGTTCAAGTTTACAACAAGCTTCAGACTGTTATGGTATTCCAAAAACAGTATTATGGAGGCGAATACAAAAAGAGGGTTATCATACACCCAGACAAGATCAAAGGAAAAGTTATGGTGCAGATATAAGAGAAGCTGCTGTAAAAGCTTTAGAAAGAGGAGAAACTCTTACAAAAGTTGCAAATGAATATAAAATACCAAAAACAACTCTATTTCGAGACAAAGCACGTTTAGTAGATCAAGGGAAACTGCCTTCTTCATTTTGGAAAAAACGCAAAACTGATGGAGAAGATTTAAAACAGTCGCGTCTTAAAGAAGCAGTAGCTGCCTGTAAAAATGGCAAAATGTCTCAAGCTACAGCATCTGCTACTTATCAAATACCAAAAACTACTATTTGGAGGAGATTGCAGAAAGAGTCGcctaaaaaagatattttgtcAAGCAAAAATCGATCAAAAAGTGAATCAAGCGCTGATTTAAATAACTCTGAGTCTCTGAAAAATGAGGAATTAAACGAAGGTGATTTCGAAGCATATTGTCCGGACGAAGGTGAAATGAGTATAACGTACATTGACGAAAGTAATTTATCCGACAGTCCAGTTATCATTCTCGCAAGTGGTGACTCTGATGACATCAGTTTACAAAATAGGTCATTAGTAGTTGTTCAAGAgGGATCTgatgaaatgaaaaactttatatcTTGTGGCTTAGAGTTAGATGAAAACTCGGTCATGGTTGAAACTCGTTAA
- Protein Sequence
- MSETPDSQMRVDSSYCFKWGNYHNYLSEVVRQLLEERCMVDVTLVAGGERIQAHRIVLGACSTLFQEILSQVNDEHPVIILSDISAQDVRSIVEFSYNGEVRIPVESINNLLDAAHSLKICGLMEIEGLDESEVSNDKDLINEEAYFLSDLSQIEPEEELDQIIEADSSNNNTSNNKKISEKKNRNSESETEIRKRKRRKSVCKREYTDAMLAKAIADIKGGKSLLESASHNNIPRSTLYMRAKSLGITLNPSRSEYTLEDMKGAIQAVLEGSSLQQASDCYGIPKTVLWRRIQKEGYHTPRQDQRKSYGADIREAAVKALERGETLTKVANEYKIPKTTLFRDKARLVDQGKLPSSFWKKRKTDGEDLKQSRLKEAVAACKNGKMSQATASATYQIPKTTIWRRLQKESPKKDILSSKNRSKSESSADLNNSESLKNEELNEGDFEAYCPDEGEMSITYIDESNLSDSPVIILASGDSDDISLQNRSLVVVQEGSDEMKNFISCGLELDENSVMVETR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01110853;
- 90% Identity
- iTF_01110853;
- 80% Identity
- iTF_01113583;