Opom001637.1
Basic Information
- Insect
- Ormyrus pomaceus
- Gene Symbol
- lov
- Assembly
- GCA_900474385.1
- Location
- UCOM01001510.1:19784-22338[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-05 0.024 14.7 0.0 2 43 209 250 208 252 0.87 2 4 6e-14 7.6e-11 41.9 0.0 3 42 260 299 258 302 0.86 3 4 0.0018 2.2 8.4 0.0 7 34 316 342 314 348 0.82 4 4 2.8e-12 3.6e-09 36.5 0.0 4 39 373 408 356 413 0.94
Sequence Information
- Coding Sequence
- ATGTCTGAGACGCCGGATTCGCAGATGCGTGTCGACTCCTCGTACTGCTTCAAGTGGGGCAATTATCACAATTACCTATCGGAGGTGGTGCGCCAACTATTGGAAGAAAGATGTATGGTCGACGTTACTCTTGTCGCCGGTGGCGAGCGTATTCAGGCGCACCGGATCGTTCTTGGCGCCTGCAGCACTCTATTTCAGgaaatCCTGAGCCAAGTTAATGATGAACATcctgttataattttaagtgatATTTCTGCACAAGATGTAAGATCAATTGTAGAATTTAGCTACAATGGAGAAGTTCGAATACCTGTGGAGAGTATTAATAACTTACTTGATGCTGCtcattctttgaaaatatgtGGTTTGATGGAGattgagGGTCTTGATGAATCTGAAGTATCAAatgataaagatttaattaatgaagaaGCTTACTTCCTGAGTGATTTAAGTCAAATAGAACCAGAAGAGGAATTGGACCAAATTATAGAGGCAGATAGTTCTAACAATAATactagtaataataaaaaaacttcagaaaaaaaaaatataaattcagaaAGCGAGACAGAAATTAGGAAACGGAAACGAAGGAAGAGTGTGTGTAAACGAGAGTACACTGATACTATGTTAGCGAATGCTATTGCTGATATAAGAGctggaaaaactttattagaGTCAGCTACTCTTAATAATATTCCTCGATCTACTCTGTATATGCGAGCAAAATCATTAGGAATAACATTAAATCCTTCAAGAAGTGAATATACTCTTGAAGATATGAAAGCAGCAATTCAAGCAGTTCTCGagggTTCAAGTTTACAACAAGCTTCAGATTGTTATGGTATTCCAAAAACAGTATTATGGAGACGAATACAAAAAGAGGGTTATCATACACCCAGACAAGATCAAAGGAAAACTTATGGTGCAGAGATAAGAGAAGCTGCTGTAAAAGCTTTAGAAAGAGGAGAAACTCTTACAAAAGTTGCAAATGAATATAAAATACcaaaaactactttatttcGAGACAAAGCACGTTTAGTAGACCAAGGAAAATTGCCTTCTTCATTTTGGAAAAAACGCAAAACTGATGGAGAAGATTTAAAACAGTCGCGTCTTGAAGAAGCAGTAGCTGCCTGTAAAAATGGCAAAATGTCTCAAGCTACAGCATCTCTTACTTATCAAATACCAAAAACTACTATTTGGAGGAGATTGCAGAAGGAGTCGcctaaaaaagatattttaccAAGTAAAAATCGATCAAAAAGTGAATCAAGTGCTGATTTAAATAACTCTGAGTCTCTGAAAAATGAGGAATTAAACGAAGGTGATTTCGAAGCATATTGTCCGGACGAAGGTGAAATGAGTATAACGTACATTGACGAAAGTAACTTATCCGACAGTCCAGTAATCATTCTCGCAAGTGGTGACTCTGATGATATAAGTTTACAAAACAGGTCATTAGTAGTTGTTCAAGAGGGATCTgatgaaatgaaaaactttatatctTGTGGCTTAGATTTAGATGAAAACTCGGTCATGGTTGAAACTAGTTAA
- Protein Sequence
- MSETPDSQMRVDSSYCFKWGNYHNYLSEVVRQLLEERCMVDVTLVAGGERIQAHRIVLGACSTLFQEILSQVNDEHPVIILSDISAQDVRSIVEFSYNGEVRIPVESINNLLDAAHSLKICGLMEIEGLDESEVSNDKDLINEEAYFLSDLSQIEPEEELDQIIEADSSNNNTSNNKKTSEKKNINSESETEIRKRKRRKSVCKREYTDTMLANAIADIRAGKTLLESATLNNIPRSTLYMRAKSLGITLNPSRSEYTLEDMKAAIQAVLEGSSLQQASDCYGIPKTVLWRRIQKEGYHTPRQDQRKTYGAEIREAAVKALERGETLTKVANEYKIPKTTLFRDKARLVDQGKLPSSFWKKRKTDGEDLKQSRLEEAVAACKNGKMSQATASLTYQIPKTTIWRRLQKESPKKDILPSKNRSKSESSADLNNSESLKNEELNEGDFEAYCPDEGEMSITYIDESNLSDSPVIILASGDSDDISLQNRSLVVVQEGSDEMKNFISCGLDLDENSVMVETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01110853;
- 90% Identity
- iTF_01110853;
- 80% Identity
- iTF_01111956;