Ocom056536.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ophraella communa
Gene Symbol
-
Assembly
GCA_035357415.1
Location
CM068988.1:24833107-24839402[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0039 1.4 11.9 1.1 2 23 148 169 147 169 0.96
2 16 0.018 6.6 9.8 4.6 3 23 177 197 175 197 0.96
3 16 0.0013 0.47 13.4 3.4 1 23 204 226 204 226 0.93
4 16 0.00035 0.13 15.2 0.9 1 23 330 352 330 352 0.99
5 16 8.1e-06 0.0029 20.3 6.6 2 23 359 380 358 380 0.97
6 16 0.0011 0.41 13.6 5.7 2 23 404 426 403 426 0.94
7 16 2.6e-06 0.00096 21.8 2.3 2 23 498 519 497 519 0.96
8 16 0.00065 0.24 14.3 0.9 1 23 525 548 525 548 0.92
9 16 1.1e-06 0.00042 23.0 0.8 1 23 553 575 553 575 0.98
10 16 2.3e-06 0.00082 22.1 2.2 2 23 586 607 585 607 0.97
11 16 9.2e-08 3.3e-05 26.4 0.9 1 23 614 636 614 636 0.97
12 16 2.1e-05 0.0075 19.0 1.6 3 23 648 668 646 668 0.92
13 16 6.8e-05 0.025 17.4 4.4 1 23 674 696 674 696 0.99
14 16 2.9e-05 0.01 18.6 1.7 1 23 702 724 702 724 0.96
15 16 4.4e-07 0.00016 24.3 0.4 1 23 730 752 730 752 0.99
16 16 9.9e-05 0.036 16.9 0.1 1 23 758 782 758 782 0.93

Sequence Information

Coding Sequence
ATGATTAATAAAGAATCTGGATTTATTATAGACAAAATATGTAGGTGTTGCATGTGTGAAAATGAAAACATGCTTAATATGTTTGAGCAGAAAAATGAAGAGAAGACGGAAGATTCAACAACACTTCTTTCAGATATGCTAGAGGCTTGTGCTTCAATTGAGgTTTCTTCTGGGGATGGATTGCCAAATAAGTTGTGTAAAAATTGCGAAGAAAAGTTAAAAAGTGCCTATGAGTTCAGAAAGTTGTGTCAAAAATCTGATACAACTTTAAAGGATCTTACTCAGGATACAAAAAAGGGGATCCGACAAGAAGAAAATATAGTTGTGCAACCAGATTTGATTGATGATGTTTTTGTTGAAGATGAAGATAATGTTCCCCTTATAGAAAGAGGtgttaaaagaaaaagaggTAGACCTAAGAAAAAAGATGTGGAAGATTTAACATGCCAATTTTGTAATAAGGTATTGCAAACCAAAAAAGGTCTAAGAATACATCTTAGTTCCCATACAGGTGAAAAGTTAcaacattgtttattttgtgatgCTAAGTATTCTAGAACTAATCACTTATTAAGGCATATAAGTACTCATAATAAGCCTGGCTTAATTCATTTTTGTGAAACTTGTGATAAAGCATTCACTGATGCAACTGAACTGTATCATCATTCAAAAGATCATGAAGAATCCAGTTTGAAAGAGAAAgacattaaaattgaaaaagaaattaaaattgaaggtCCAGAACTTTTTGATCCAAATAAGGAAGAGAAAAAAAATGAGAACCAAACAACTGATCAAGACCAAGCAGCAGATCATCATAGTGATCAAGATGGTAATGGTTTTAATGATTTTGCAGCCAGTGATGGAGATGACAGTAAGGGTAGTGATGATGATTTCACCATAGCATTTGATGAAAAGAAAACTAAAGGacgaaagaagaaaaaagtaaaaaatgaagaTGCTGgacaagataaagataaagcaTTATATGAATGTAAGGAATGTTCTAAAGTAATGACAACATATTTAGGACTTAAAATTCACATGAGGAAACACACTGGAGCTGATTTGTCTACCTGCAATcTATGCAACAAGTCATTTACTAAACATAGTCATCTTGAAAGACATTTGCAAACTCATGGCTTAGATGGGGAAGAGAAAGTGAAAGCTCTCAAGAAATATACAGACTCCAAAGGgaaaaagATAATGGAATGTGATTATTGTGACCGGAAATTCAAATACAAGAAAAGTTTCTTACACCACATGCACCAGGAACATGGCATGGATGAATTTGATAGTGATTTTGATAAATTGGAGAGTGAGAAATCCAAAAAACTGAAGTCTGAATTAAAGGATGaaaataaactAGAAAACAGTTTAAAACTGGATGAGCTTAATATTGATGGCTCTAAACAAGAAGATGATGATGGTGACATTGGTATTCCAGATGCTGAAaatgtatttgttaaaaaagcaAGGAGTAAAAATCAAGTTTGTCATGTATGTGGTGCATCATTTTCAAGGGCAAATCATCTTACCAGGCATATGACTTTGCATCGGGCTGTTCTTGTCCATCAGTGTGATAGatgtgaaaaggCGTTTGCTACAGATGAACATCTCAAAGTTCATGTTGAAGAGGAACATATCAACAAACCCTATGTATGTACAGTTTGTAACAAACCATTTAGCAGAGGGGAACATTTAATAAGACACTTGAAAGTTCATCAGAATACTTCTGATAAAGATACAAATTTGAAATGTTCAATTTGTGAAACGAGTTTCACAAGATCGGATCATTTAGCAAGGCATACGAAAATCCATTTACTTCAAGATAAGCGTCACGTATGTGGCGAATGCGGCAAGGCTTTCAATCGCTTAGACAACCTAAAGACACATCAAAGGATCCATACTGGCGAGAAGGACACCTCAAAGTTGCATTTGTGCATCTATTGTGGAAAGGAATTCAATAATTCCAGTAACATGATTGTCCACATGAGGCGTCATACTGGTGAGAGGCCATACAAGTGTAGTGAATGCGGCAAAGGTTTCCCAAGATCACATGATTTGAAATGCCATGAACGCACTCATTCGGGTGAAAAGCCGTATCTTTGTACTTTATGTGGAAAGTCCTTTAATAAGAGCAATAAATTGTTACGTCACAGTAGAGTTCACACTGGAGAACGTCCTTATGTATGTAATATTTGTAGCCGAGCGTTTACTCAATCCAACGATCTAGCGTTACATATGCGAAGGCACACTGGAGCTCGACCGTACGCATGCGGTGTATGTCCAGCACGATTCATTCAATCTGGACAATTAAAAACGCACAGAAGAACAACTGGCCATTGGATGGATGTTCAACCAGATCTAAAAGGAGGACATAGAGTTGAACCTGTGACTCCCGCCCATGAACCGATGCCCATTAGGTTTAAAGTTCACAGGTGA
Protein Sequence
MINKESGFIIDKICRCCMCENENMLNMFEQKNEEKTEDSTTLLSDMLEACASIEVSSGDGLPNKLCKNCEEKLKSAYEFRKLCQKSDTTLKDLTQDTKKGIRQEENIVVQPDLIDDVFVEDEDNVPLIERGVKRKRGRPKKKDVEDLTCQFCNKVLQTKKGLRIHLSSHTGEKLQHCLFCDAKYSRTNHLLRHISTHNKPGLIHFCETCDKAFTDATELYHHSKDHEESSLKEKDIKIEKEIKIEGPELFDPNKEEKKNENQTTDQDQAADHHSDQDGNGFNDFAASDGDDSKGSDDDFTIAFDEKKTKGRKKKKVKNEDAGQDKDKALYECKECSKVMTTYLGLKIHMRKHTGADLSTCNLCNKSFTKHSHLERHLQTHGLDGEEKVKALKKYTDSKGKKIMECDYCDRKFKYKKSFLHHMHQEHGMDEFDSDFDKLESEKSKKLKSELKDENKLENSLKLDELNIDGSKQEDDDGDIGIPDAENVFVKKARSKNQVCHVCGASFSRANHLTRHMTLHRAVLVHQCDRCEKAFATDEHLKVHVEEEHINKPYVCTVCNKPFSRGEHLIRHLKVHQNTSDKDTNLKCSICETSFTRSDHLARHTKIHLLQDKRHVCGECGKAFNRLDNLKTHQRIHTGEKDTSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICSRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKTHRRTTGHWMDVQPDLKGGHRVEPVTPAHEPMPIRFKVHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00026266; iTF_00911292; iTF_00736019; iTF_00459150;
90% Identity
iTF_00911292; iTF_00736019;
80% Identity
-