Basic Information

Insect: Lochmaea capreae
Gene Symbol: -
Assembly: GCA_949126875.1
Location: OX421398.1:18938004-18950643[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0048 0.99 11.6 1.1 2 23 148 169 147 169 0.96

2 16 0.0044 0.9 11.7 2.7 3 23 177 197 175 197 0.96

3 16 0.0015 0.31 13.2 0.6 1 23 204 226 204 226 0.96

4 16 0.00043 0.088 14.9 0.9 1 23 333 355 333 355 0.99

5 16 0.0002 0.042 15.9 8.6 2 23 362 383 361 383 0.97

6 16 0.0014 0.28 13.4 5.7 2 23 407 429 406 429 0.94

7 16 4.8e-06 0.00098 21.1 2.4 3 23 501 521 499 521 0.96

8 16 0.00081 0.17 14.1 0.9 1 23 527 550 527 550 0.92

9 16 1.4e-06 0.00029 22.7 0.8 1 23 555 577 555 577 0.98

10 16 2.8e-06 0.00058 21.8 2.2 2 23 588 609 587 609 0.97

11 16 1.1e-07 2.3e-05 26.2 0.9 1 23 616 638 616 638 0.97

12 16 2.6e-05 0.0053 18.8 1.6 3 23 650 670 648 670 0.92

13 16 8.4e-05 0.017 17.1 4.4 1 23 676 698 676 698 0.99

14 16 3.6e-05 0.0073 18.3 1.7 1 23 704 726 704 726 0.96

15 16 5.3e-07 0.00011 24.1 0.4 1 23 732 754 732 754 0.99

16 16 0.00012 0.025 16.6 0.1 1 23 760 784 760 784 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0048	0.99	11.6	1.1	2	23	148	169	147	169	0.96
2	16	0.0044	0.9	11.7	2.7	3	23	177	197	175	197	0.96
3	16	0.0015	0.31	13.2	0.6	1	23	204	226	204	226	0.96
4	16	0.00043	0.088	14.9	0.9	1	23	333	355	333	355	0.99
5	16	0.0002	0.042	15.9	8.6	2	23	362	383	361	383	0.97
6	16	0.0014	0.28	13.4	5.7	2	23	407	429	406	429	0.94
7	16	4.8e-06	0.00098	21.1	2.4	3	23	501	521	499	521	0.96
8	16	0.00081	0.17	14.1	0.9	1	23	527	550	527	550	0.92
9	16	1.4e-06	0.00029	22.7	0.8	1	23	555	577	555	577	0.98
10	16	2.8e-06	0.00058	21.8	2.2	2	23	588	609	587	609	0.97
11	16	1.1e-07	2.3e-05	26.2	0.9	1	23	616	638	616	638	0.97
12	16	2.6e-05	0.0053	18.8	1.6	3	23	650	670	648	670	0.92
13	16	8.4e-05	0.017	17.1	4.4	1	23	676	698	676	698	0.99
14	16	3.6e-05	0.0073	18.3	1.7	1	23	704	726	704	726	0.96
15	16	5.3e-07	0.00011	24.1	0.4	1	23	732	754	732	754	0.99
16	16	0.00012	0.025	16.6	0.1	1	23	760	784	760	784	0.93

Sequence Information

Coding Sequence: ATGATTAATAAAGAATCATATCTTATTATAGACAAAATATGTCGGTGTTGCATGTGTGAAAATGAAAACATGCTCAACATGTTTGAGCAGAAAAATGAAGAGGAGGCGGAAGATTCTACGACACTTTTATCAGATATGCTAGTGGCTTGTGCTTCAATTGAGgTTTCCTCTGGGGATGGTTTGCCAAATAAGTTGTGTAAAAGTTGCGAAGAAAAGTTGAAAACTGCCTATGAGTTCAGGAAATTATGTCAAAAATCGGATTCAACTTTAAAGGATCTCACTCAGGATACAAAAAAAGGAATTCGACAAGAAGAAAATATTGTTGTACAACCAGATCTACATGATGATGTTTTCATTGAAGATGAAGACAATGTTCCCCTTTTAGAAAGAGATAATAAAAGAAAACGAGGTAGACCTAGGAAGAAAGATGTAGAACATTTGACTTGTCagttttgtaataaagtattGCAGACTAAGAAAGGTCTAAGAATACATCTTAGTTCTCATGCAGGTTTAAAGTTTcaacattgtttattttgtgaTGCTAAATATTCTAGAACTAATCAGTTGCTAAGGCATATTAATACTCATAATAAACCTGGTTTAATACATCCTTGTGAAAGTTGTGAAAAAACATTCACTGTGGCAGCAGAGCTATATCAACATACTAAAGATCATGAAGAACCAGAGAATAGTATAACGGGGAATGTAATTAAAactgaaaaagaaattaaaactgAAGGACCTGAACTTTTCGATATAATCAGGGAGGAGAAAAGATTTGAGAACCAAATAGTAACTGATCAAGATCAAGTTGTAAGTCATTATAGTGATCAAGATGATAATGGCTTCAATGATTTTGCAGCCAGTGATGGGGATGATAGTAAAGGTAGTGATGAAGACTTTACCATAGCACTTGATGAAAAAAAGACTAAAGGaaggaagaagaaaaaattgaagacTGAAGATGCAGGACAAGATAAAGATAAAGCATTGTATGAATGTAAGGAATGTTCTAAAGTAATGACAACATACTTAGGACTTAAAATCCACATGAGAAAACATACTGGAGCTGATTTATCTACATGCAatCTATGCAACAAGTCATTCACTAAACATAGTCATCTTGTAAGACATTTACACACTCATGGCATAGTTGATGAAGAGAAAATGAATGCTTTCAAGAAATATACAGACTCAAAAGGGAAAAAGATCATggaatgtgaatattgtgacCGAAAATTCAAATACAAGAAGAGTTTCCTACACCACATGCACCAGGAACATGGTATGGATGAGTTTGATAGTGATTTTGATAAACTGGAAGGCGAGAAATCCAAGAAACTAAAATCTGAATCGAAAGATGAACTTAACAAAATGGAAAACGATTTGAAACATGATGAGCTTCATATTGATAACAAGCAAGAAGATGATGACGGTGATATTGGCATAGACGCTGAAAATGTATTCATAAAGAAAGCAAGAAGTAAAAATCAAATTTGTCATGTGTGTGGTGCATCATTTTCAAGAGCAAACCATCTTACCAGACATATGACATTGCATCGTGCTGTTCTTGTTCATCAGTGCGATAGaTGTGAAAAGGCATTTGCTACAGATGAACATCTTAAAGTTCATGTTGAAGAGGAACATATCAACAAACCCTATGTATGCACGGTTTGTAATAAACCATTTAGCAGAGGCGAGCATTTAATAAGACACTTGAAAGTACATCAAAATACTACCGATAAAGATACTAATTTGAAATGTTCCATATGTGAAACTAGCTTCACAAGatcTGATCATTTGGCACGGCACACGAAAATCCACTTACTTCAAGACAAGCGCCACGTATGCGGCGAATGTGGCAAGGCTTTTAATCGCTTAGACAACCTAAAGACTCACCAGAGGATCCATACCGGCGAGAAGGACACCTCAAAGCTGCATCTGTGCATCTATTGCGGAAAGGAATTCAATAATTCCAGCAACATGATTGTCCATATGAGGCGTCATACAGGTGAAAGACCGTACAAGTGCAGTGAGTGCGGTAAAGGTTTTCCAAGGTCGCATGATTTGAAATGCCATGAACGTACACATTCAGGTGAAAAGCCATATCTTTGTACTTTATGTGGCAAATCATTTAATAAGAGCAATAAATTGTTGCGTCATAGTAGAGTTCACACCGGAGAGCGTCCTTATGTATGTAATATTTGTACCCGAGCATTTACCCAATCCAACGATCTAGCGTTACATATGCGTAGACACACCGGAGCCCGACCGTACGCTTGTGGTGTATGTCCTGCACGATTTATTCAATCCGGACAGTTGAAGACACATAGAAGAACAACTGGTCATTGGATGGATGTACAACCAGATCTTAAAGGAGGACATCGAGTTGAGCCAGTGACTCCTGCTCACGAACCTATGCCCATTAGGTTTAAAGTTCATAGGGCTATGAAGAAAGAACAAAATATTCTTGAACAAGCTGGTCTAATGACAACTCAACCTTCAACTTCTGAAGGCATCACCATGAACAATCAAATCCCGACCATTCAAAGCGAACCCCATAGAATTGTAATGGGGATTATGGGCAATTTAAAGATCCCCGGACCAGATACCAGCATCCAACCGCTGCTAATTGACAGCGCTAAGTTAGCAGAACTGCAAAACGCAGGATTAGTGAACCTACCATCTGTTATACAAACAACGAATGGTGatgaaatcaaattaaaatcggAAGTGGGAAACTTTGGTATGCCGCAAGAAATTGAAAAACGGGAAGGTAACACAAACAACTCGTATCAGGACGATGTAGTGATTTATTCGAGTGTAGGGCATACTTCGACTACTTATACAAGCagtgaaaatttcaattttcaaagttTTCATTAG
Protein Sequence: MINKESYLIIDKICRCCMCENENMLNMFEQKNEEEAEDSTTLLSDMLVACASIEVSSGDGLPNKLCKSCEEKLKTAYEFRKLCQKSDSTLKDLTQDTKKGIRQEENIVVQPDLHDDVFIEDEDNVPLLERDNKRKRGRPRKKDVEHLTCQFCNKVLQTKKGLRIHLSSHAGLKFQHCLFCDAKYSRTNQLLRHINTHNKPGLIHPCESCEKTFTVAAELYQHTKDHEEPENSITGNVIKTEKEIKTEGPELFDIIREEKRFENQIVTDQDQVVSHYSDQDDNGFNDFAASDGDDSKGSDEDFTIALDEKKTKGRKKKKLKTEDAGQDKDKALYECKECSKVMTTYLGLKIHMRKHTGADLSTCNLCNKSFTKHSHLVRHLHTHGIVDEEKMNAFKKYTDSKGKKIMECEYCDRKFKYKKSFLHHMHQEHGMDEFDSDFDKLEGEKSKKLKSESKDELNKMENDLKHDELHIDNKQEDDDGDIGIDAENVFIKKARSKNQICHVCGASFSRANHLTRHMTLHRAVLVHQCDRCEKAFATDEHLKVHVEEEHINKPYVCTVCNKPFSRGEHLIRHLKVHQNTTDKDTNLKCSICETSFTRSDHLARHTKIHLLQDKRHVCGECGKAFNRLDNLKTHQRIHTGEKDTSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICTRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKTHRRTTGHWMDVQPDLKGGHRVEPVTPAHEPMPIRFKVHRAMKKEQNILEQAGLMTTQPSTSEGITMNNQIPTIQSEPHRIVMGIMGNLKIPGPDTSIQPLLIDSAKLAELQNAGLVNLPSVIQTTNGDEIKLKSEVGNFGMPQEIEKREGNTNNSYQDDVVIYSSVGHTSTTYTSSENFNFQSFH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01106593;
90% Identity: iTF_01106593;
80% Identity: -