Dcar019982.1
Basic Information
- Insect
- Diorhabda carinata
- Gene Symbol
- -
- Assembly
- GCA_029229535.1
- Location
- CM055262.1:20177766-20183989[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.8 9e+02 1.2 0.3 3 18 66 81 65 81 0.92 2 17 0.0055 0.5 11.4 0.7 2 23 148 169 147 169 0.97 3 17 0.0011 0.098 13.6 2.7 2 23 176 197 175 197 0.97 4 17 0.051 4.7 8.4 1.7 1 23 204 226 204 226 0.94 5 17 0.00042 0.039 14.9 0.9 1 23 333 355 333 355 0.99 6 17 0.0002 0.018 15.9 8.6 2 23 362 383 361 383 0.97 7 17 0.0014 0.13 13.3 5.7 2 23 407 429 406 429 0.94 8 17 3.2e-06 0.0003 21.6 2.3 2 23 504 525 503 525 0.96 9 17 0.0002 0.018 15.9 0.9 1 23 531 554 531 554 0.92 10 17 1.4e-06 0.00013 22.7 0.8 1 23 559 581 559 581 0.98 11 17 3.4e-06 0.00031 21.5 2.3 2 23 592 613 591 613 0.97 12 17 1.1e-07 1e-05 26.2 0.9 1 23 620 642 620 642 0.97 13 17 2.5e-05 0.0023 18.8 1.6 3 23 654 674 652 674 0.92 14 17 8.3e-05 0.0076 17.1 4.4 1 23 680 702 680 702 0.99 15 17 3.5e-05 0.0032 18.3 1.7 1 23 708 730 708 730 0.96 16 17 5.4e-07 4.9e-05 24.0 0.4 1 23 736 758 736 758 0.99 17 17 0.00012 0.011 16.6 0.1 1 23 764 788 764 788 0.93
Sequence Information
- Coding Sequence
- ATGATTAATAAAGAGTCCGGACTTATTATAGACAAAATATGTCGGTGTTGCATGTGTGAAAATGAAAACATGCTCAATATGTTTGAGCAAAAAAGTGAAGATGAAGCCGAAGACTCTACAACACTTCTATCGGATATGCTGGTGGCTTGTGCTTCTATTGAGGTTTCTTCTGGAGATGGTTTGCCAAATAAATTGTGTAAAGGATGCGAAGAAAAGTTAAAAAGTGCCTATGAATTCAGGAAGTTATGTCAAAAATCTGACTCCACTTTAAAGGATCTAACTCAGGATACAAAAAAAGGGATTCGACAAGAGGAAGATATAGTTGTTCAACCAGATTTGCACGATGACGTTTTTGTCGAAGATGAAGATAACGTTCCACTTTTAGAAAGAGGTGTAAAAAGAAAAAGGGGTAGGCCTAGAAAGAAAGATGTAGAAAATTTGACATGTCAGTTTTGTAATATAGTATTGCAGACCAAAAAAGGATTAAGGATACATCTTCGTTCGCACGCAGGCGAAAAGATACAACAATGTTTGTTTTGTGATGCTAAATACAGTAGAACTAATCACTTGCTTAGGCATATTAATACACATAATAAGCCTGGATTGATACATTCTTGTGAAAGTTGTGATAAAACTTTTGCCGAAGCAGCTGTGCTATATCATCATAGCAAAGAACACGAAGAAACAGAACACAGTTTAAGGGTAAaggaaattaaaattgaaaaagatattaaaactGAAGGACCAGAACTTTTTGATATCAATAAggaagataaaaaatatgaaaatgaaatagcGACTGAAAAAGACCAAGAAGTTACTCAATACAGTGATCAAGATGATAATTGTTTCAATGAATTCGTACCAAGTGATGGAGATGATAGTAAAGGTAGTGATGAAGATTTTACAATAGCTCTTGAAGAGAAAAAGACCAAAGgaaggaagaagaaaaaagtgaaaacagAAGATACACAAGATGATAAAGACAAAGCTTTGTATGAATGTAAGGAATGTTCTAAAGTAATGACAACATATTTGGGACTCAAAATTCACATGAGGAAACATACCGGATCTGATTTGTCCACGTGTAATcTGTGCAACAAGTCATTCACTAAACACAGTCATCTTGTAAGGCATTTACACACTCATGGCATAGTTGATGAAGAGAATATGAAAACTCTCAAGAAATATACAGATTCAAAAGGGAAAAAGaTCATGGAATGTGACTATTGTGATCGAAAATTCAAATACAAGAAGAGTTTCTTACACCACATGCATCAGGAACATGGCATGGATGATTTTGACAGCGATTTTGATAAAGTAGATGGcgacaaattgaaaaaaataaaatccgAATCGAAGGATGGCCAAGAACACACCAACATGGGAGTTGGTTTGTCTCAGGATGAACTTCAAATTAACAGCACAAAACAAGAAGATGACGATGGCGATGTTGGTATCCCTGATGCCGAAAATGTATTCGTGAAAAAAGCAAGAAGTAAAAATCAAGTTTGTCATGTATGTGGTGCATCATTTTCGAGAGCAAATCATCTTACAAGACACATGACTTTGCATCGAGCTGTTCTTATTCATCAGTGTGACAgATGCGAAAAGGCATTTGCTACAGAAGAACATCTCAAAGTTCACGTTGAAGAGGAACATATCAACAAACCTTATGTTTGTACAGTTTGTAACAAACCGTTCAGCAGGGGCGAGCATTTAATAAGACATTTGAAAGTACATCAAAATTCTTCTGATAAAGATACTAATTTGAAGTGCTCAATATGTGAAACTACATTCACAAgatcgGATCATTTGGCAAGGCACACAAAGATTCATCTACTTCAAGATAAACGTCACGTTTGCGGCGAATGCGGCAAGGCTTTTAATCGTTTGGACAATCTAAAGACCCACCAAAGAATCCACACCGGCGAAAAGGATACTTCCAAGTTGCATTTGTGCATCTATTGTGGAAAGGAATTCAATAATTCCAGTAACATGattgttCATATGCGGCGTCATACAGGTGAGAGGCCATACAAGTGCAGCGAATGCGGTAAAGGTTTTCCGAGATCGCACGATTTAAAATGCCACGAACGTACACATTCTGGAGAAAAACCCTACCTGTGTACTTTATGTGGTAAATCATTTAATAAGAGTAATAAATTGttGCGTCATAGTAGAGTTCATACAGGAGAACGTCCGTATGTATGTAATATTTGTAGTCGAGCATTTACTCAATCCAATGATTTAGCGTTACATATGCGCAGACACACCGGAGCCCGACCTTACGCTTGCGGTGTATGTCCGGCACGATTCATTCAATCGGGACAATTAAAAACACACAGAAGAACCACCGGTCATTGGATGGACGTTCAGCCAGATCTGAAAGGAGGACATCGAGTCGAACCCGTTACTCCCGCTCATGAACCGATGCCTATAAGATTTAAAGTACATAGGACTATGAAGAAGGAACAAAATATTCTCGAACAAGCTGGCCTAATGACAACTCAGGCATCAACATCAGACGGCGTAACAATGAATAATCAAGTTCAATCGATACAAAGCGAACCGCATAGAATTGTAATGGGTATTATGGGTAATTTGAAAATTCCCGGTCCAGATGCCACCATCCAACCTCTATTAATCGACGGCGCTAAGTTAGCAGAACTGCACAATGCAGGCTTAGTAAACTTACCATCTGTTATCCAAACAACGAACGGTGatgaaatcaaattgaaatcGGAAGTAGCAAATTTTGGTATGCCACAGGAAATTGAAAAACGGGAAAGTAACACAAACAACTCGTATCAGGACGATGTAGTGATATATTCGAGCGTTGGACATACTTCGACTACTTACACAAGcagtgaaaatttcaatttccaaaaCTTCCATTAA
- Protein Sequence
- MINKESGLIIDKICRCCMCENENMLNMFEQKSEDEAEDSTTLLSDMLVACASIEVSSGDGLPNKLCKGCEEKLKSAYEFRKLCQKSDSTLKDLTQDTKKGIRQEEDIVVQPDLHDDVFVEDEDNVPLLERGVKRKRGRPRKKDVENLTCQFCNIVLQTKKGLRIHLRSHAGEKIQQCLFCDAKYSRTNHLLRHINTHNKPGLIHSCESCDKTFAEAAVLYHHSKEHEETEHSLRVKEIKIEKDIKTEGPELFDINKEDKKYENEIATEKDQEVTQYSDQDDNCFNEFVPSDGDDSKGSDEDFTIALEEKKTKGRKKKKVKTEDTQDDKDKALYECKECSKVMTTYLGLKIHMRKHTGSDLSTCNLCNKSFTKHSHLVRHLHTHGIVDEENMKTLKKYTDSKGKKIMECDYCDRKFKYKKSFLHHMHQEHGMDDFDSDFDKVDGDKLKKIKSESKDGQEHTNMGVGLSQDELQINSTKQEDDDGDVGIPDAENVFVKKARSKNQVCHVCGASFSRANHLTRHMTLHRAVLIHQCDRCEKAFATEEHLKVHVEEEHINKPYVCTVCNKPFSRGEHLIRHLKVHQNSSDKDTNLKCSICETTFTRSDHLARHTKIHLLQDKRHVCGECGKAFNRLDNLKTHQRIHTGEKDTSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCSECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICSRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKTHRRTTGHWMDVQPDLKGGHRVEPVTPAHEPMPIRFKVHRTMKKEQNILEQAGLMTTQASTSDGVTMNNQVQSIQSEPHRIVMGIMGNLKIPGPDATIQPLLIDGAKLAELHNAGLVNLPSVIQTTNGDEIKLKSEVANFGMPQEIEKRESNTNNSYQDDVVIYSSVGHTSTTYTSSENFNFQNFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01106593;
- 90% Identity
- -
- 80% Identity
- -