Ocos022283.1
Basic Information
- Insect
- Ophion costatus
- Gene Symbol
- tfip11
- Assembly
- GCA_951751655.1
- Location
- OX632366.1:25973634-25976640[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.6e-93 5.7e-89 298.9 18.2 3 275 388 653 386 653 0.98 2 2 0.19 1.3e+03 -0.7 0.0 248 272 671 695 661 698 0.85
Sequence Information
- Coding Sequence
- atGTCGGAAGACGAGGTGGAACGTTTCGAAATAACGGATTATGATATGGACAACGAATTCAATATTAATCGACCACGGCGAAAGCTGACGAAGCAGCAACAGATGCTCGGGGTGTGGGCCGACGACAGTGACGAGGAACGAGCGACTGCTGGGCAATCGAAGAATTTCAACAAGGGGCCAAAGAATTATACGGCACCGATGAATTTTGTGGCTGGTGGAATTCAGCAGTCGGGAAAAACTGAGCGGAAAAAAGGCGATGACGAGGACAAAGACGGGGATGACGATGATGGCGAAGGTGACAACGAAGATgccaacgacaacgacgacgatacCCGCAGAGCCCGAAGGGGCGACGATGATTATGTGCCTAACAGCTCAAGCGACTCGGAGGAGGAAACGATAAGCAACGAGAGGGTAAGAGCGTCCTTCTCATCTGACGCGGACGGAGATATCGCCGGAATGAGACGAAAAGGCGGGCTGATAAATCCAGTCTTGATCAAGAGCGGAATGGGTTTCGAGCCTGGTAAAGGTCTGGGCAAAAAGCTCCAGGGCATAAGCGCCTCTGTAGAGGCCCACTTGCGAAGGGGAAGAGGCGCCATAGGGGCCTATGGCCCAGAAAAGTTGGCCAAAATTCCTGAGAAAAAGAAGGACGAGGAGGCCGACGAGGCCAAAGAATTTAAAGGAAATTTGTCTCAGTGGAAGGTGCGGTATCATTATCGGAGCGTCGATCAAGTGTTGGAGGATGGAAAAACAATGGTAAACAGGAAAGTCTGCGCGAGCAGTGACATGAGCAGAGTAAAGGTGATAGACATGACAGGGCCAGAGCAAAGGGTTCTCAGTGGATATCACGCGATCGCTAGTGGTCAAAAACGTCCAGACAGAGCATCGCTTGCGCACGTCGACAAGACAAGAAGCTCGGGCTATTTCGAGCTACCCGAGCTTCGGCACAATCTGAATTTATTGGTCGACATGTGCGAACAGAATATCATACAGAACGACAGACGAACGCGCAATTTGAGTGATCGAGCGGTGGCACTCGAGGCTGAGAGAAAAAACGTAGCGAAGGCGGTTGGTCAGCAGGAACAGCTGATCGATACACTCGAGAAGGTGGTCGCGATCGTCGAAAAACTTGTCGATCGGAACGACTCTACAGCCTTCGGGGAAACCgcagaagtttttaaaaaattacaaaaggaTCATTACGAGGAGTACCAGCTCTACGAATTGGGCGATTTGGCGAATAGTTTCGTTGCGCCGAAATTAAAGGACAGCCTCGCGACATGGAAACCTCTCGTCCGGCCAAAACAGCCGATCGATCTGATCAAAGAGTGGAAGGACATTCTCGAGGTTGGGAGCAGCGCGCTGCAGACACGCGAAATGCGACCGTACGATCAGTTGATCTGGAACGCTTGGATGCCGTCTGTGCGCGGGGCAGTACAAGAATGGACATGCAGTCAGCCCGAGCCGTTCATTGAACTCATAGAGGATTGGATGCCCCTACTTCCGGCAtggattttggaaaatatcttGGACCTCGTGGTACTTCCAAAATTGACGCTCGAGGTCGAGGAATGGAATCCGCAAACGGACACGCTGCCCATTCATACGTGGATTCACCCTTGGTTGCCGATAATGCGCAATCGCATGGACACATTGATTTATCCGATAATCCGTCGAAAACTGGGCTCGGCGTTGAGCAGTTGGCACCTGTCGGATAGAACGGCTCGTTTGATACTTCAGCCTTGGTCTCAAGTTTTCTCCAAGGGCGACATGGAAGCTTTTCTCGTGAAAAATATTCTTCCGAAGCTCCAAGTGACACTTTCCGAATTTGTCATTAATCCCCATCAGCAATATTTGGATCAGTGGAATTGGGTATACGAGTGGGTTACTTTGCTCCCGATACAAATAATGGTGGGCTTGTTGGACAAGTATTTCTTCCCAAAGTGGCTACAGGTGCTCGCTCTCTGGCTCAATCATTCGCCGAATTACGCTCAAATAACGAACGGGTACGTGGGCTGGAAGGGCATGCTCAACAACAAATTATTGGCCGAGCCGGTTATCAAAGATTACTTCAAAAAAGCATTGGACATGATGAATCGCGCCGTATCGGCGCCACAGACTCTCCAGCCGGGAGCAATGGAGCAAGTGTCGTATCTGACGAGTCTCGAACGAACGCAACCTACCGTCTCACAGATACCAGCAACGGCACAGCCGAGAATCGAGAGACTCGCGCAGGCTGTGCGGACTGTATCGCAGATACCCCAAGGCTTCAAGGATCTTGTGCAGAAAAAATGCGAGGAACGCGGCATACTCTTCATGCCCATCTCCAATCGATATCGCGAGGCCAAACAAGTGGAAATGTCCTCTTTGCTTTGTCACAACGGGACGAATTGGGTACCGTCGCACCTCAATGCTCTTCTCGATATGTCCGAGATCTAA
- Protein Sequence
- MSEDEVERFEITDYDMDNEFNINRPRRKLTKQQQMLGVWADDSDEERATAGQSKNFNKGPKNYTAPMNFVAGGIQQSGKTERKKGDDEDKDGDDDDGEGDNEDANDNDDDTRRARRGDDDYVPNSSSDSEEETISNERVRASFSSDADGDIAGMRRKGGLINPVLIKSGMGFEPGKGLGKKLQGISASVEAHLRRGRGAIGAYGPEKLAKIPEKKKDEEADEAKEFKGNLSQWKVRYHYRSVDQVLEDGKTMVNRKVCASSDMSRVKVIDMTGPEQRVLSGYHAIASGQKRPDRASLAHVDKTRSSGYFELPELRHNLNLLVDMCEQNIIQNDRRTRNLSDRAVALEAERKNVAKAVGQQEQLIDTLEKVVAIVEKLVDRNDSTAFGETAEVFKKLQKDHYEEYQLYELGDLANSFVAPKLKDSLATWKPLVRPKQPIDLIKEWKDILEVGSSALQTREMRPYDQLIWNAWMPSVRGAVQEWTCSQPEPFIELIEDWMPLLPAWILENILDLVVLPKLTLEVEEWNPQTDTLPIHTWIHPWLPIMRNRMDTLIYPIIRRKLGSALSSWHLSDRTARLILQPWSQVFSKGDMEAFLVKNILPKLQVTLSEFVINPHQQYLDQWNWVYEWVTLLPIQIMVGLLDKYFFPKWLQVLALWLNHSPNYAQITNGYVGWKGMLNNKLLAEPVIKDYFKKALDMMNRAVSAPQTLQPGAMEQVSYLTSLERTQPTVSQIPATAQPRIERLAQAVRTVSQIPQGFKDLVQKKCEERGILFMPISNRYREAKQVEMSSLLCHNGTNWVPSHLNALLDMSEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01102792;
- 90% Identity
- iTF_01100585; iTF_01100586;
- 80% Identity
- -