Ofas028085.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oligia fasciuncula
Gene Symbol
Zfa
Assembly
GCA_963082905.1
Location
OY720411.1:12471789-12484992[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0058 0.52 11.8 1.4 1 23 258 280 258 280 0.98
2 11 0.026 2.4 9.7 0.4 1 23 287 309 287 309 0.98
3 11 4.5 4e+02 2.7 0.9 1 8 313 320 313 336 0.87
4 11 0.0004 0.036 15.4 2.9 3 23 344 365 343 365 0.95
5 11 7.4e-05 0.0067 17.8 0.3 2 23 372 394 371 394 0.96
6 11 6.6e-06 0.0006 21.1 1.0 1 23 407 429 407 429 0.96
7 11 1.2e-05 0.0011 20.2 0.2 1 22 435 456 435 460 0.94
8 11 0.00011 0.0096 17.3 1.5 1 23 468 491 468 491 0.97
9 11 1.1e-05 0.00098 20.4 0.3 1 23 497 520 497 520 0.97
10 11 2.1e-05 0.0019 19.5 0.2 1 23 529 551 529 551 0.98
11 11 0.0028 0.25 12.8 0.4 1 19 557 575 557 580 0.90

Sequence Information

Coding Sequence
ATGGATGAAAGTACTACTCGAAACCACAGATATGTGGAGGAAAAACCAGAATCGGCAAAGAAGTATTGTTTCGGGTGTTTGTGTGTAAATGAAGagaaacatttacaaaattatgcaTTTCAATGTGGTCCCCTCAAGAATATATTCCAGatgGACCGTATATTCCTATGTTACCTGTGCAAGAGGGTGGCGCAACATACTGAACAGTTCATACAGAATGTGCAAAGCAATCAACTACTATTGGAAAATTTTCATAATGTAATGGATGAGACGTTAAAATCAGTATGCACACAGACACAACCCCTAGTCAACTTAACACAAGTGCCATTTGATGTGATAGAGTTATCAGAGAAAGACGGCCATAGTTCTGAGGAGACCTTCTCTGTCGTATGCTCGAGGAGTAGGAGTAAGGATGTCCAGGTCAAGACTGAGATGAAAGAGGAGGAGTATATGGACCATCTTGAAGGAGAGTTTATTAATGGGGGTGATGaGTTCCCCGAGTCATACGTAAAAGACGAAGATGACGCATTTCCCCTGAAAGCCTTACTGAAAGAAGAATTGCAACTAGAGGACATTGAGAGCCTGGACCTCATGACTCTTAGTGCGACACTCAAAAAGAACAGACATAAGAAGAAAAGTAAAATCAAACGGGAAAACTTGGCAGAGATAAAGAGAGATATACCTAAAATAAAGACGATATACATAACTAGGGAACAATGCTTGGAAGAACGTGTGCGAATGGAGCAGGACCAGAAATATCTGAACTTTGCTTACAAATGTGGGAACTGTATCAAAGGGTTCAGCTTTAAAGGCAGCTATGATAAGCATATGGAGAAACATAATCAGTGCATGGGGGACTACCAATGTGATATTTGTAAGCAAAGGATGGATACGGAAGACAGACTGGTTGGTCATATGAGATATCATTTAATCCGCTACAAGTGTACAGAATGTGGTTTAATAAGAAACTGTCGCATAACGATTCAGGATCACTACAATGCATATCACAATCACGGTTTTCAATCTCTGTGTCCTTTTTGTAGCAAGAATTACAAACGTCAGACGTCACTACGCAAGCACATACACTACGCACACTCGCGCAAGGGCCGCGTACAGTGCGCGTACTGCCACAAGACATACGCCGACAAAGGCGTACTGCGCGCTCACATGATCATTAAACATTCCAAAGAAGTATCGGCGGTTCCGGTAAGCAAGAAGCATGTGTGCCAAGAGTGCGGCAAGGCCTTCCAGTCACCTTCTCAGCTGAGGAACCACAGCATCAAGCATTCCGACAGCCGGGACTACTACTGCGTGGAGTGCGATAAGAGTTTCAAATCAGATGCCGCATTGAAGAAACATTTGAAGACTGCGGCAATCCACGTCAGTTATTTAGAATTACCaTTTCCCTGCCTTCACTGTGACAAGCGTTTCGCGATACGGCGAGATTTAGAGCGACACACCAATAGAGTACATCTAAATATCAAACCGTATATTTGTGATAGATGTGATAAGAGTTACGTGAACAACTGGTCTTTGAAGGAACATCAGCGGTTGGTCCACGATGGCTACAAGAGACCGCTACAGTTCCCATGCCCCATGTGCGACAAGGTATTCGATCGCAACCAGATATTAAAAGGTCACATTCGGACCCACACTGGAGAACGTCCATACCAGTGCAGCAAATGCCCAGCATCCTTCAGCCAATCCAGCATACTTCGCACCCACGACAGACTCATACACCTCAAACTGACAAGGGATGGACGGCCTAAGGTCAAATAG
Protein Sequence
MDESTTRNHRYVEEKPESAKKYCFGCLCVNEEKHLQNYAFQCGPLKNIFQMDRIFLCYLCKRVAQHTEQFIQNVQSNQLLLENFHNVMDETLKSVCTQTQPLVNLTQVPFDVIELSEKDGHSSEETFSVVCSRSRSKDVQVKTEMKEEEYMDHLEGEFINGGDEFPESYVKDEDDAFPLKALLKEELQLEDIESLDLMTLSATLKKNRHKKKSKIKRENLAEIKRDIPKIKTIYITREQCLEERVRMEQDQKYLNFAYKCGNCIKGFSFKGSYDKHMEKHNQCMGDYQCDICKQRMDTEDRLVGHMRYHLIRYKCTECGLIRNCRITIQDHYNAYHNHGFQSLCPFCSKNYKRQTSLRKHIHYAHSRKGRVQCAYCHKTYADKGVLRAHMIIKHSKEVSAVPVSKKHVCQECGKAFQSPSQLRNHSIKHSDSRDYYCVECDKSFKSDAALKKHLKTAAIHVSYLELPFPCLHCDKRFAIRRDLERHTNRVHLNIKPYICDRCDKSYVNNWSLKEHQRLVHDGYKRPLQFPCPMCDKVFDRNQILKGHIRTHTGERPYQCSKCPASFSQSSILRTHDRLIHLKLTRDGRPKVK