Ctra041151.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- Zfa
- Assembly
- GCA_905163495.1
- Location
- LR991044.1:16382820-16400705[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0048 0.65 12.1 1.4 1 23 171 193 171 193 0.98 2 11 0.037 5 9.3 0.3 1 23 200 222 200 222 0.98 3 11 8 1.1e+03 1.9 1.2 1 9 226 234 226 249 0.78 4 11 1e-05 0.0014 20.5 2.7 2 23 255 277 254 277 0.95 5 11 3.5e-05 0.0047 18.8 0.9 2 23 284 306 283 306 0.96 6 11 2.2e-05 0.0029 19.4 0.1 1 23 319 341 319 341 0.97 7 11 1.2e-05 0.0016 20.3 0.2 1 22 347 368 347 372 0.94 8 11 0.00084 0.11 14.4 1.1 2 23 381 403 380 403 0.95 9 11 2.1e-05 0.0029 19.5 0.7 1 23 409 432 409 432 0.97 10 11 1.8e-05 0.0024 19.7 0.2 1 23 441 463 441 463 0.98 11 11 0.0023 0.32 13.0 0.4 1 19 469 487 469 492 0.90
Sequence Information
- Coding Sequence
- ATGGATGAGACGCTAAAATCAATGCACACTCAAACCCAACCGCTAGTCAATTTAACACAAGTGCCATTTGATGTGATAGAGTTATCAGAGCGAGACGGCCATAGTTCTGAGGAGACCTTTTCTGTCATATGCTCGAGGAGCAGGAGTAAGGATGTCCAGGTCAAGACTGAGATGAAAGAGGAGGAGTATATGGACCATCTTGAAGGAGAGTTTATTAATGGTGGCGATGaGTTCCCCGAGTCATACGTAAAAGATGAAGAAGATGCGTTCCCTCTCAAAGCATTACTGAAAGAAGAATTGCAACTAGAGGACATAGATAGCCTGGACCTGATGAGTCTTAGTGCGACGCTCAAACAGAACAAAAATAAGAAGAAAAGTAAAATCAAACGAGAAACCTTGACACAGATAAAGAGAGACATACCTAAAATAAAGACAATATACATAACTAGGGAACAATGCATGCAAGAACGTGCGCGAATGGAGCGGGACCAGAAATATGTGAACTTTGCCTACAAATGTGGGAACTGCATCAAAGGGTTCAGCTTTAAAGGCAGCTATGATAAGCATATGGAGAAACATAATCAGTGCATGGGGGACTACGAATGTGATATTTGTAAACAGAGAATGGACACAGAAGATAGACTGGTTGGCCATATGAGGTATCATTTAATccGTTATAAATGTGCAGAATGTGGTTTAACAAGAAACTGTCGCATGACGATACAAGATCACTACAATGCATATCATAGTCAGGGTTTTCAAACGTGTCCTTTTTGCAGCAAGAATTTCAAGCGACAGACGTCACTACGCAAGCACATAAACTACTCACATAAGCACAAGGGCCGCGTACAGTGCGCGTACTGCCACAAGACGTACGCCGACAAAAGCGTACTGCGCTCTCACATGATCATTAAACATTCCAAAGAAGTATCAGCGGTTCCGATAAGCAAGAAGTATGTGTGCCAAGAGTGTGGCATGGCCTTCAAGGCACCTTCTCAGCTGAGGAACCACAGCATCAAGCATTCCGACAGCCGGGACTACTACTGCGTGGAGTGTGATAAGAGTTTCAAATCAGATGCCGCATTGCAAAAGCATTTGAAGACTGCAGCCATGCACGTCAATTATTTAGAGTTACCATTGCCCTGCCTTCACTGTGAGAAGCGATTTGCGATACGTCGAGATCTAGAGAGACATACCAACAGAGTACACTTAAATATCAAGCCGTTTACTTGCGATAGATGTGATAAGAATTACGTGAACAACTGGTCTTTGAAGGAGCATCAGCGGTTGGTTCATGAAGGGTATAAAAGACCGCTACAATTTCCATGCCCTATGTGTGACAAGGTTTTTGATCGCAATCAGATATTAAAAGGCCACATCCGCACCCACACCGGGGAGCGTCCATACCAGTGCAGCAAATGTCCAGCTTCTTTCAGCCAATCCAGCATACTTCGCACCCACGACAGACTTATACACCTCAAACTAACCAGAGATGGACGTCCTAAGGTCAAATAG
- Protein Sequence
- MDETLKSMHTQTQPLVNLTQVPFDVIELSERDGHSSEETFSVICSRSRSKDVQVKTEMKEEEYMDHLEGEFINGGDEFPESYVKDEEDAFPLKALLKEELQLEDIDSLDLMSLSATLKQNKNKKKSKIKRETLTQIKRDIPKIKTIYITREQCMQERARMERDQKYVNFAYKCGNCIKGFSFKGSYDKHMEKHNQCMGDYECDICKQRMDTEDRLVGHMRYHLIRYKCAECGLTRNCRMTIQDHYNAYHSQGFQTCPFCSKNFKRQTSLRKHINYSHKHKGRVQCAYCHKTYADKSVLRSHMIIKHSKEVSAVPISKKYVCQECGMAFKAPSQLRNHSIKHSDSRDYYCVECDKSFKSDAALQKHLKTAAMHVNYLELPLPCLHCEKRFAIRRDLERHTNRVHLNIKPFTCDRCDKNYVNNWSLKEHQRLVHEGYKRPLQFPCPMCDKVFDRNQILKGHIRTHTGERPYQCSKCPASFSQSSILRTHDRLIHLKLTRDGRPKVK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01093377;
- 90% Identity
- iTF_00906413;
- 80% Identity
- -