Oiva028205.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Oeneis ivallda
Gene Symbol
-
Assembly
GCA_029955525.1
Location
JARPMR010000019.1:11411781-11439570[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.1e-05 0.0011 20.7 0.6 3 23 130 150 129 150 0.98
2 16 7.8e-06 0.00078 21.2 2.7 1 23 156 178 156 178 0.99
3 16 5.1e-06 0.00052 21.8 2.6 1 23 193 215 193 215 0.98
4 16 7.1e-05 0.0072 18.2 3.1 1 23 230 252 230 252 0.98
5 16 0.00022 0.022 16.6 2.8 1 23 304 326 304 326 0.98
6 16 4.5e-05 0.0045 18.8 0.1 1 23 333 355 333 355 0.99
7 16 7.6e-06 0.00076 21.2 2.0 1 23 361 383 361 383 0.99
8 16 0.05 5.1 9.2 1.8 1 23 390 412 390 412 0.98
9 16 8.4e-07 8.5e-05 24.2 2.3 1 23 418 440 418 440 0.99
10 16 0.058 5.9 9.0 1.8 1 23 447 469 447 469 0.98
11 16 3.4e-06 0.00035 22.3 1.5 1 23 475 497 475 497 0.99
12 16 0.00065 0.066 15.1 0.7 1 23 504 526 504 526 0.99
13 16 3.8e-06 0.00038 22.2 1.9 1 23 532 554 532 554 0.98
14 16 0.0028 0.28 13.2 0.3 1 20 560 579 560 582 0.93
15 16 5.2e-05 0.0052 18.6 1.3 2 23 589 610 588 610 0.96
16 16 4.9e-06 0.00049 21.8 1.4 1 23 616 639 616 639 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAGGCAGAGCCTATGAGTTTTTACACACACCCGCACATCAACACCGGCCCCCCAACAATAGTCCGCTCCGACTCGGCACACGGCATCATCAGCATGAACCCGCACCACCAGGAGGACTCGAAGGACAGCCTCTCAGTGCAGCAGCAGGTGCAGCACCAGCAAGAGATGATGGAGCAGCACCAGCAGCAGGAGCTGCAGCACGAAGATGAAGTAGATAATTTAAGCTTCAAAGGCATGGAAGATGAAGGCGTTGAAATGGATATGGACGGCCGGCAATGTTCTCAGAGTATGGGCGTGGACATGGGATCAGTTCAAACAAAGATGGAAGTTTCAAATGGTCAAGGACTACCACGGTCTAAGCCACAAGCTTGTAAgGTTTGCGACGCAGCGTTCTGCCGCAAGCCGTACCTCGAGGTGCACATGCGCACGCACACCGGCGAGCGGCCGTTCCAATGCGACTTGTGCCTCAAACGCTTCACGCAGAAATCCAGCCTCAACACGCACAAACGCGTCCACACCGATGAGCACATGCGCGCTTTGATGGTGAAGGAGCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACAGACACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAGATACACACCGTAGGCGACAGAATGTCTGATGGACAAATAACGGGTAATTCCCTCATGGTAGTGGGCAGGGTGTGCGGCGCTCAGCGGAGAGTGGAATTATTTGTCCATCgtggttttgttttgtttctcTGTCCCCCCGGCGGCGCAGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGAGCTTACACGTGCGGGCAATGCCCCGCGGCGTTCGCCCGCCGCCCCTACCTGGACACTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATCCATAGACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTCAAGCGCTTCACGCAGAAGTCGAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACGTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGCGACGTGTGCCTCAAGAGATTCGCGCAAAAGTCTACCCTCAACATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAAATACACATGCGCACGCACACTGGCGAGCGGCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAATCCACCCTCAACATTCACAAGCGAATTCATACCGGGGAACGACCTTACGCATGTGATATTTGCCAAAAACGGTTCGCGGTGAAGAGCTATGTTACAGCACACAGATGGTCGCACGTGGCGGACAAGCCTCTAAACTGCGAGCGGTGCTCGATGACATTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCAGCGGCCCGTGCTACGAGTGCAGCGTCTGCGGGCGGACCTTCGTGCGCGACAGCTACCTCATACGGCATCACAACCGAGTGCACCGCGAGAACCACAGCAACATGTCCGCGAACAGCATCGGCACCATCGGCAGCGTGGCCAACGCCAACAACTCCAGCAACGGCAACTACGACTCGCCCGGCGTGTGCGACCTCAGTTTTGTGCCGATGGTGAACCGCTACATGACGTCGCAGGGCACGCAGGTGTCGATGCAGGACACCCAGAGCAAGATGGCCGCGATGTCGCCGCAGTCGATCGCCTCTATGTcgtcccCGCCGCCGCCGCATACGCCCACGCCGCAGCCGCCAATGTCCGCCCTGCGACACGCTGATTGA
Protein Sequence
MFEQQIKAEPMSFYTHPHINTGPPTIVRSDSAHGIISMNPHHQEDSKDSLSVQQQVQHQQEMMEQHQQQELQHEDEVDNLSFKGMEDEGVEMDMDGRQCSQSMGVDMGSVQTKMEVSNGQGLPRSKPQACKVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTVGDRMSDGQITGNSLMVVGRVCGAQRRVELFVHRGFVLFLCPPGGAGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRAYTCGQCPAAFARRPYLDTHMRTHTGERPYQCDACLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSSGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNMSANSIGTIGSVANANNSSNGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMAAMSPQSIASMSSPPPPHTPTPQPPMSALRHAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00354348; iTF_00994540; iTF_01017903; iTF_00115124; iTF_00771243;
90% Identity
-
80% Identity
-