Cgly017892.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coenonympha glycerion
Gene Symbol
-
Assembly
GCA_963855885.1
Location
OY979645.1:7073259-7087647[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00014 0.0083 17.2 0.1 3 23 130 150 129 150 0.97
2 18 1.2e-06 7.5e-05 23.6 1.2 1 23 156 178 156 178 0.99
3 18 7.7e-06 0.00047 21.1 2.7 1 23 184 206 184 206 0.99
4 18 5e-06 0.00031 21.7 2.6 1 23 249 271 249 271 0.98
5 18 7e-05 0.0043 18.1 3.1 1 23 286 308 286 308 0.98
6 18 4.9e-07 3e-05 24.9 1.5 1 23 323 345 323 345 0.99
7 18 0.00022 0.013 16.5 2.8 1 23 351 373 351 373 0.98
8 18 6e-05 0.0037 18.3 0.1 1 23 380 402 380 402 0.99
9 18 7.4e-06 0.00046 21.1 2.0 1 23 408 430 408 430 0.99
10 18 0.049 3 9.1 1.8 1 23 437 459 437 459 0.98
11 18 8.3e-07 5.1e-05 24.1 2.3 1 23 465 487 465 487 0.99
12 18 0.057 3.5 8.9 1.8 1 23 494 516 494 516 0.98
13 18 3.4e-06 0.00021 22.2 1.5 1 23 522 544 522 544 0.99
14 18 0.00064 0.039 15.0 0.7 1 23 551 573 551 573 0.99
15 18 3.7e-06 0.00023 22.1 1.9 1 23 579 601 579 601 0.98
16 18 0.0027 0.17 13.1 0.3 1 20 607 626 607 629 0.93
17 18 5.1e-05 0.0031 18.5 1.3 2 23 636 657 635 657 0.96
18 18 4.8e-06 0.00029 21.7 1.4 1 23 663 686 663 686 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAAGCGGAGCCCATGAGcttTTACACACACCCTCACGTGACGGGCGGCCCGCAGAGCATCGTGCGCTCGGAGTCGGCGCACGGCATCATCAGCATGAACGCGCACCACCAGGAGGACTCCAAGGACAGCCTGTCCGTgcagcagcagcaccagcaccagcaggAGCTGATGGAGCAGCACCAGCCGCAGGAGATGCAGCACGACGACGAAGTAGACAACTTGAGCTTCAAAGGTATGGAGGATGAAGGAGTTGAGATGGATATGGATGGACGGCAATGTTCTCAGGGCATGGGCGTCGACATGGGATCAGTTCAGACAAAAATGGAAGTATCTAACGGCCAAGGGATACCCCGCTCTAAACCCCAAGCCTGTAAGGTCTGTGGTAAGGTGTTGTCATCTGCATCATCATACTATGTCCACATGAAGTTGCACTCGGGGAATAAACCTTTCCAGTGTACAGTTTGCGACGCGGCGTTCTGCCGCAAGCCGTACCTCGAGGTGCACATGCGCACGCACACCGGCGAGCGGCCCTTCCAGTGCGACCTGTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAACACGCACAAACGCGTCCACACCGGGGGAGGTCTGGAACCCACTTCGGGCTCCGTGGAGTCCGTAGTGCGTTCGGAGTGGCTTGGATCAAAAGGTAGCTCGCTTTTAGATGAGCACATGCGCGCTTTGATGGTGAAGGAGCGGCCGTACAAGTGCGAGCTCTGTCAGATGCGCTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATACACACGGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAGATACACACCGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAATGTGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAACGTATACATACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAAGGGCGCCCTTACACGTGCGGGCAATGCCCCGCGGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCGTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAATATCCATAGACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATACACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACGTGCAAGCAGTACCTGGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAGTCCACTCTGAACATACACAAACGAACGCACACAGTGCAAGGGCGGCCGTATCAGTGCATGGAGTGCCCGGCGGCGTTCACTTGCAAGCCGTACCTGGAAATACACATGCGCACGCACACCGGCGAGCGGCCCTTCGAGTGCGATGTCTGTTACAAACGCTTCACGCAGAAGTCGACGCTCAACATTCACAAGCGAATTCACACCGGGGAACGACCTTACGCATGTGATATTTGCCAAAAACGGTTCGCTGTGAAGAGCTACGTAACAGCGCACAGATGGTCGCACGTGGCGGACAAGCCGCTGAACTGCGAGCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACTCCAGCGGGCCGTGCTACGAGTGCAGCGTGTGCGGCCGCACCTTCGTGCGCGACAGCTACCTCATACGACATCACAACCGCGTGCACCGCGAGAACCACAGCAACATGTCGGCGAACAGCATCGGCGGCATCAGCAGCGTCAACAACGCCAACAACTCCAACAACGGCAACTACGACTCGCCCGGCGTGTGCGACCTCAGCTTCGTGCCCATGGTGAACCGCTACATGACGTCGCAGGGCACGCAGGTGTCGATGCAGGACACGCAAAGCAAGATGTCCGCTATGTCGCCGCAATCCATCGCTTCCATGtcgtcgccgccgccgccgcacacGCCCACGCCGCAGCCGCCGATGGCCGCCATGCGCCACGTCGATTGA
Protein Sequence
MFEQQIKAEPMSFYTHPHVTGGPQSIVRSESAHGIISMNAHHQEDSKDSLSVQQQHQHQQELMEQHQPQEMQHDDEVDNLSFKGMEDEGVEMDMDGRQCSQGMGVDMGSVQTKMEVSNGQGIPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTGGGLEPTSGSVESVVRSEWLGSKGSSLLDEHMRALMVKERPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYTCGQCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSSGPCYECSVCGRTFVRDSYLIRHHNRVHRENHSNMSANSIGGISSVNNANNSNNGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASMSSPPPPHTPTPQPPMAAMRHVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01092281;
90% Identity
iTF_01151388;
80% Identity
-