Basic Information

Insect: Metalampra italica
Gene Symbol: -
Assembly: GCA_949699065.1
Location: OX452982.1:5179908-5189719[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.1e-06 0.00018 22.1 2.6 1 23 19 41 19 41 0.98

2 16 4e-05 0.0023 18.6 0.5 1 23 56 78 56 78 0.98

3 16 4.4e-05 0.0025 18.5 3.1 1 23 105 127 105 127 0.98

4 16 5.4e-07 3.1e-05 24.5 1.5 1 23 142 164 142 164 0.99

5 16 0.00013 0.0077 16.9 2.8 1 23 170 192 170 192 0.98

6 16 6.9e-05 0.0039 17.9 0.1 1 23 199 221 199 221 0.99

7 16 9.5e-06 0.00055 20.6 2.1 1 23 227 249 227 249 0.99

8 16 0.031 1.8 9.5 1.8 1 23 256 278 256 278 0.98

9 16 5.2e-07 3e-05 24.5 2.3 1 23 284 306 284 306 0.99

10 16 0.13 7.3 7.6 1.8 1 23 313 335 313 335 0.98

11 16 2.1e-06 0.00012 22.6 1.5 1 23 341 363 341 363 0.99

12 16 0.014 0.79 10.6 0.8 1 23 370 392 370 392 0.99

13 16 1.6e-06 9.4e-05 23.0 1.8 1 23 398 420 398 420 0.98

14 16 0.0017 0.098 13.5 0.3 1 20 426 445 426 448 0.93

15 16 3.3e-05 0.0019 18.9 1.4 2 23 455 476 454 476 0.96

16 16 3e-06 0.00017 22.1 1.4 1 23 482 505 482 505 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.1e-06	0.00018	22.1	2.6	1	23	19	41	19	41	0.98
2	16	4e-05	0.0023	18.6	0.5	1	23	56	78	56	78	0.98
3	16	4.4e-05	0.0025	18.5	3.1	1	23	105	127	105	127	0.98
4	16	5.4e-07	3.1e-05	24.5	1.5	1	23	142	164	142	164	0.99
5	16	0.00013	0.0077	16.9	2.8	1	23	170	192	170	192	0.98
6	16	6.9e-05	0.0039	17.9	0.1	1	23	199	221	199	221	0.99
7	16	9.5e-06	0.00055	20.6	2.1	1	23	227	249	227	249	0.99
8	16	0.031	1.8	9.5	1.8	1	23	256	278	256	278	0.98
9	16	5.2e-07	3e-05	24.5	2.3	1	23	284	306	284	306	0.99
10	16	0.13	7.3	7.6	1.8	1	23	313	335	313	335	0.98
11	16	2.1e-06	0.00012	22.6	1.5	1	23	341	363	341	363	0.99
12	16	0.014	0.79	10.6	0.8	1	23	370	392	370	392	0.99
13	16	1.6e-06	9.4e-05	23.0	1.8	1	23	398	420	398	420	0.98
14	16	0.0017	0.098	13.5	0.3	1	20	426	445	426	448	0.93
15	16	3.3e-05	0.0019	18.9	1.4	2	23	455	476	454	476	0.96
16	16	3e-06	0.00017	22.1	1.4	1	23	482	505	482	505	0.97

Sequence Information

Coding Sequence: ATGGCCTGGGTTCTAGATGAGCACATGCGCGCGTTGATGGTGAAGGACCGCCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTGAACCGACACAAGAAAATACATACGGAGGAACACAAGCGCGCGCTGCTGGCTAAGGACCGCCCCTACCAATGCGGCATCTGCTTTGTCACGTTCACCCAGAAATCGAGTTTGGGTCGGCACGGAAAAATACACACCGGTGGAGTTGCTATATCGAAACTCGTATACCTTATAGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGGCGACACGGAAAGATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTCCGCCCCTATCAGTGCGACGTGTGTGACAAGCGGTTCACGCAGAAGTCCAGTCTGGGCACACATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTgcacgaaaaaatacatacggTGCAAGGGCGCCCTTTCACGTGCGGGCTATGCCCGGCCGCGTTCGCCCGCCGCCCCTACCTGGACATTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGCCTCAAGCGCTTCACGCAGAAGTCCAGTCTCAACATACACAAGCGGACGCACTCAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACGTGCAAGCAATACCTGGAGATACACACGCGCACCCACACCGGCGAGCGACCCTATCAGTGCGACATCTGCCTCAAACGCTTCACGCAGAAGTCCAGTCTCAACATACACAAGCGGACGCACTCAGTGCAAGGGCGGCCGTTCCAGTGCCTGTCGTGCCCAGCCGCCTTCACGTGCAAGCAGTACCTTGAGATCCATAACCGCACCCACACCGGCGAGCGGCCCTACCAGTGCGATGTGTGCCTCAAGCGGTTCGCGCAGAAGTCCACGCTCAACATACACAAAAGAACGCACACAGTGCAAGGGCGTCCGTACCAGTGCATGGAATGCCCGGCCGCGTTCACGTGCAAGCCGTACCTGGAGATCCACAACCGCACGCACACGGGCGAGCGGCCCTACGAGTGCGACGTGTGTTACAAGCGGTTCACGCAGAAGTCCACGCTCAACATACACAAGCGAATACACACCGGAGAGCGCCCGTACGCTTGTGATATTTGCCAGAAACGTTTCGCTGTGAAGAGCTACGTAACAGCTCACAGATGGTCCCACGTGGCCGACAAGCCGCTGAACTGCGACCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACAGCGCCGGCTCCTGCTACGAGTGCAGCGTGTGCGGGCGGACCTTCGTGCGCGACAGCTATCTCATAAGGCATCACAACCGCGTGCACCGCGAGAACCACAGCAACGTGTCCGCGAACAGCATGGGCACCATCAACAGCGTCGCCACCAACACCAACAATTCCAACAGCAACTACGACTCGCCGGCGGTGTGCGACCTCAGCTTCGTGCCGATGGTGAACCGCTACATGACGTCTCAGGGCACGCAGGTGTCCATGCAGGACGCGCCCAGCAAGATGTCGGCCATGTCGCCGCAATCCATAGCCTCCATTTCATCGCCGCCTCCCCCGCACACCCCCACGCCCCAGCCCCAGATGTCGGGTCAGATGCATCTCGCGGACTGA
Protein Sequence: MAWVLDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHKRALLAKDRPYQCGICFVTFTQKSSLGRHGKIHTGGVAISKLVYLIEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDVCDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFTCGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHNRTHTGERPYECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSMGTINSVATNTNNSNSNYDSPAVCDLSFVPMVNRYMTSQGTQVSMQDAPSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01092281;
90% Identity: -
80% Identity: -