Basic Information

Insect: Anthocharis cardamines
Gene Symbol: RGM1
Assembly: GCA_905404175.1
Location: FR989966.1:6227074-6239581[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.7e-05 0.0017 19.1 0.3 3 23 99 120 98 120 0.97

2 16 3.2e-06 0.00032 21.4 2.7 1 23 126 148 126 148 0.99

3 16 2.1e-06 0.00021 21.9 2.6 1 23 163 185 163 185 0.98

4 16 2.1e-07 2e-05 25.1 1.5 1 23 200 222 200 222 0.99

5 16 9.2e-05 0.0089 16.8 2.8 1 23 228 250 228 250 0.98

6 16 0.00015 0.014 16.1 0.0 1 23 257 279 257 279 0.97

7 16 3.1e-06 0.00031 21.4 2.0 1 23 285 307 285 307 0.99

8 16 0.021 2 9.4 1.8 1 23 314 336 314 336 0.98

9 16 3.5e-07 3.4e-05 24.4 2.3 1 23 342 364 342 364 0.99

10 16 0.024 2.4 9.2 1.8 1 23 375 397 375 397 0.98

11 16 1.4e-06 0.00014 22.5 1.5 1 23 403 425 403 425 0.99

12 16 0.00027 0.026 15.3 0.7 1 23 432 454 432 454 0.99

13 16 1.6e-06 0.00015 22.3 1.9 1 23 460 482 460 482 0.98

14 16 0.0012 0.11 13.3 0.3 1 20 488 507 488 510 0.93

15 16 1.6e-05 0.0016 19.1 1.3 2 23 517 538 516 538 0.97

16 16 2e-06 0.0002 22.0 1.4 1 23 544 567 544 567 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.7e-05	0.0017	19.1	0.3	3	23	99	120	98	120	0.97
2	16	3.2e-06	0.00032	21.4	2.7	1	23	126	148	126	148	0.99
3	16	2.1e-06	0.00021	21.9	2.6	1	23	163	185	163	185	0.98
4	16	2.1e-07	2e-05	25.1	1.5	1	23	200	222	200	222	0.99
5	16	9.2e-05	0.0089	16.8	2.8	1	23	228	250	228	250	0.98
6	16	0.00015	0.014	16.1	0.0	1	23	257	279	257	279	0.97
7	16	3.1e-06	0.00031	21.4	2.0	1	23	285	307	285	307	0.99
8	16	0.021	2	9.4	1.8	1	23	314	336	314	336	0.98
9	16	3.5e-07	3.4e-05	24.4	2.3	1	23	342	364	342	364	0.99
10	16	0.024	2.4	9.2	1.8	1	23	375	397	375	397	0.98
11	16	1.4e-06	0.00014	22.5	1.5	1	23	403	425	403	425	0.99
12	16	0.00027	0.026	15.3	0.7	1	23	432	454	432	454	0.99
13	16	1.6e-06	0.00015	22.3	1.9	1	23	460	482	460	482	0.98
14	16	0.0012	0.11	13.3	0.3	1	20	488	507	488	510	0.93
15	16	1.6e-05	0.0016	19.1	1.3	2	23	517	538	516	538	0.97
16	16	2e-06	0.0002	22.0	1.4	1	23	544	567	544	567	0.97

Sequence Information

Coding Sequence: ATGAACCAACATCATACACAGGAGGATTCAAAGGACAGCCTTATAATTCATCATCAAGTACAACACCAACAGGAGCTGCTGGAACAGCACCAACAGGATATGCAACAGGATGATGAGGTGGATAACTTAAGTTTCAAAGGAATGGATGATGAAGGGGTGGAAATGGACATGGATGGACGGCAATGTTCTCAGGGTATGGGGGTTGACATGGGTTCAGTTCAAACCAAGATGGAATCCAATGGCCAAGGAATACCCCGATCAAAACCTCAGGCTTGTATGCGTACAAATGGTGCGTGCCCGCAGGTGTGCGACGCGGCGTTCTGCCGCAAGCCGTACCTGGAGGTGCACATGCGCACGCACACGGGCGAGCGGCCCTTCCAGTGCGACCTGTGCCTCAAGCGCTTCACTCAGAAGTCCAGCCTCAACACGCACAAGCGCGTCCACACCGATGAGCACCTTCGCGCATTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGCTTCACGCAGAGTTCCAGCCTCAACCGCCACAAGAAAATACATACGGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGTCCCTATCAATGTGACATCTGTGACAAGCGCTTCACTCAGAAGTCCAGCCTGGGCACTCATAAACGTATACACACCGGCGAGCGGCCCTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTGCAAGGGCGTCCATTCGCCTGCGGGCTTTGCCCGGCGGCGTTCGCCCGTCGCCCCTACCTGGACATTCACATGCGCACGCATACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAGACGGACGCATACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCGGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGGACGCACACGGGCGAGCGGCCGTATCAGTGCGACATCTGCCTGAAGCGCTTTACGCAGAAGTCAAGTCTCAACATTCACAAGCGGACGCACTCAGATCGCCTTACAGTGCAGGGCCGGCCCTTCCAGTGTCTGCAGTGTCCCGCGGCCTTCACCTGTAAGCAGTACCTCGAGATTCACAATCGCACGCACACAGGCGAGCGGCCGTACCAGTGCGACGTGTGTCTCAAGAGATTCGCGCAAAAGTCCACACTAAATATACACAAAAGAACGCACACGGTGCAAGGGCGGCCGTATCAGTGTATGGAGTGCCCGGCAGCGTTCACTTGCAAGCCGTACCTGGAAATACACATGCGCACGCACACAGGCGAGCGGCCCTTCGAGTGCGATGTGTGTTACAAACGTTTCACGCAGAAATCCACTCTCAACATTCACAAGCGCATTCATACCGGGGAACGCCCCTACGCTTGTGATATATGTCAAAAAAGATTTGCCGTGAAGAGTTATGTTACGGCTCATAGATGGTCGCATGTGGCGGATAAGCCGCTGAGTTGCGACCGCTGTTCAATGACATTCACGTCGAAGTCGCAGTTCGCACTGCACATCCGCACGCACGCCGCCGGCCCCTGCTACGAGTGCAGTGTCTGCGGCAGGACTTTCGTGCGAGACAGCTATCTCATACGTCACCACAACCGCGTGCACCGCGACAGCCACAGCAACATGTCGGCCAACAGTGGAGTTCTCAGCAACGTGAACACCGGTGGCAACAACTCGGCCAACTATGATTCGCCCGGCGTGTGCGACTTGAGCTTCGTGCCAATGGTGAACCGGTACCTGACGTCGCAAGGCACGCAGGTCTCGCTCGACACGACCACCAAAATGTCTGCCATGTCTCCGCAGTCCATCGCCTCCATTTCGTCCCCCCCTCCGTCGCACACCCCCACCCCGCAACAGATGACATCAGGGATGCGACTCTCGGACTGA
Protein Sequence: MNQHHTQEDSKDSLIIHHQVQHQQELLEQHQQDMQQDDEVDNLSFKGMDDEGVEMDMDGRQCSQGMGVDMGSVQTKMESNGQGIPRSKPQACMRTNGACPQVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHLRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFACGLCPAAFARRPYLDIHMRTHTGERPYQCDACLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSDRLTVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLSCDRCSMTFTSKSQFALHIRTHAAGPCYECSVCGRTFVRDSYLIRHHNRVHRDSHSNMSANSGVLSNVNTGGNNSANYDSPGVCDLSFVPMVNRYLTSQGTQVSLDTTTKMSAMSPQSIASISSPPPSHTPTPQQMTSGMRLSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01092281;
90% Identity: -
80% Identity: -