Tocu004040.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_963555595.1
- Location
- OY741959.1:12648459-12661821[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.24 6.1e+03 -3.3 1.2 44 70 78 105 50 113 0.41 2 3 8.9e-79 2.3e-74 250.9 20.6 1 297 126 411 126 413 0.89 3 3 1 2.5e+04 -8.8 18.5 1 49 410 457 410 488 0.69
Sequence Information
- Coding Sequence
- ATGGGGCATCGATCCGAAGTGGCCACGCCTGATAATAGTGACGAGGAGAGCGGCGAGGCCTTCACCGACGGTGATTTCGGTGATTCCGATGAAGAAACTATTGCAGAAAAAAACGATGATATAAAATCCTCTCATATTCCGATCAATGAGACTGTAAACGAAGAACTTGGAAAGAATAATGATGATTCAATAAATGATTTGGACCAAGCAGATAGCTCCGAGAATAACACCAAAGTTAACGGACATAAGAGTAGTGAGAATGGACATTTGAGTGAGTCGGAGGCTCACAGTCAATCGAAAACAGAGTTTCGCAGGGATTCCCATGGTGATCAGAATCCATCAATCGTTGGAATTCTCGGTGACCAACAAAACCATGCGGAGCAGCGGCTGGCGGCGCGGCGTGCGGCGCGTGCGGAGGCGCGGGAGATCCGCATGCGCGAGCTAGAGCGACAGCAGCGCGAACAAGAAGACCATGCTGACAAAGCATATGATATGTATGCAGAAACGGTGGGTCGTCGCGGCGGCACCCGGCTGGCTGCTCTCAGTCCCGGCGTGGTGCACTCGCCGCGTCGGAGCTCCGAGGACTCCGCTGACGACGCCTTCAATATTAAAGACCTGAGGCACGAATTGAAAGAAGTGGAGGAGAAGTTTCGCAAGGCGATGATCCTGAACGCCCAGTTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACAGGATAGAGGAGCTGCACGAGGAGTACGCGCAGTTGCAGCGGGAGCACAAAGAGAAATGCTCAGCTCACGAGCGTTTAAAACGCGAGCACGTGGCTTTAGAGCGCGAGGTTATGTTAGCGCGGGATGCAGTGAGAGCCAGGGACGCGGCCGCAGCAGCCGCGGGGTTCGCGTTCGTGGACGCGGGGGCCGAGGGGGCCGCGCCGGGGGGCGAGGGGGGCCAGCCGGGGGGCTGTCCGGCGCTCGCGCTTGTTTCTCATCACTCGCAGCAGTTGCTTGATGACGCCGGGGAAGGGACATTAGACGTCCGGTTGCAGAAGCTGCTGAGCTCGAAGCAGTCGTTAGAGTCGGAGGTGCGCAAGTTGAAGTTGCAGTTGAACGAGGAGCGCGCCGCTCGCCAGAACGGGGTCGCTAATCATAACGACCACGAGTATGAGAATGAACTGGAGAGTGCCCGCAAGTCCCTGACGGAGGCCCGGgggcgcgcggcgcgggcggAGGCGGAGGCGGCGCtgcaggcggcggcggcggcgcgcctCGAGGCGCAGCTCGCCCGCCTGCGCGCGCGCCAGGACCACCAGGACGACCACGAGGAACAACTCAAGCAGGAGCGCCGCAAGCTGCAGAgagagGCAAGAGAAGCTCTCAATCGAGTCGAAGAGTTGGAGACGGAGAACAGTCACTTGACCAAACGTTTGGACAAACTCAAAAACGCCAAGTCAGCCCTACTAAAGGATCTGTGA
- Protein Sequence
- MGHRSEVATPDNSDEESGEAFTDGDFGDSDEETIAEKNDDIKSSHIPINETVNEELGKNNDDSINDLDQADSSENNTKVNGHKSSENGHLSESEAHSQSKTEFRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPGVVHSPRRSSEDSADDAFNIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHVALEREVMLARDAVRARDAAAAAAGFAFVDAGAEGAAPGGEGGQPGGCPALALVSHHSQQLLDDAGEGTLDVRLQKLLSSKQSLESEVRKLKLQLNEERAARQNGVANHNDHEYENELESARKSLTEARGRAARAEAEAALQAAAAARLEAQLARLRARQDHQDDHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00820103;
- 90% Identity
- iTF_01083346;
- 80% Identity
- -