Nful013890.1
Basic Information
- Insect
- Nylanderia fulva
- Gene Symbol
- -
- Assembly
- GCA_005281655.1
- Location
- NW:1093164-1097277[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.9 4.7e+02 1.3 4.7 2 23 408 429 407 429 0.91 2 15 0.0032 0.26 11.6 3.7 2 23 439 461 438 461 0.91 3 15 7.2e-05 0.0057 16.8 0.3 1 23 467 489 467 489 0.98 4 15 4e-06 0.00032 20.7 2.6 1 23 495 517 495 517 0.96 5 15 5.2e-05 0.0041 17.2 3.4 1 23 526 548 526 548 0.97 6 15 2.2e-05 0.0018 18.3 1.5 1 23 554 576 554 576 0.98 7 15 2.1e-07 1.7e-05 24.7 0.9 1 23 581 603 581 603 0.98 8 15 0.0032 0.25 11.6 4.0 1 23 609 631 609 631 0.99 9 15 0.00011 0.0085 16.2 0.2 2 23 651 672 650 672 0.97 10 15 0.00078 0.063 13.5 0.5 1 23 678 701 678 701 0.94 11 15 0.00071 0.057 13.6 0.6 1 23 707 729 707 729 0.96 12 15 0.00039 0.031 14.4 3.7 1 23 735 757 735 757 0.98 13 15 2.1e-06 0.00017 21.6 5.8 1 23 763 785 763 785 0.98 14 15 1.9e-06 0.00015 21.7 0.8 1 23 791 813 791 813 0.98 15 15 6.6e-05 0.0053 16.9 2.0 2 23 817 838 816 838 0.98
Sequence Information
- Coding Sequence
- ATGAGAATCGTTTGTGCTGcattaaattgtaaatattCATCGGAAAATGAAGATTTGTCAAATGtgattttcattaattttcctAACGATGACACagCCAAAACGTGGGCAGAATGTTGTGGCAGATCGGATTTAGCCACAAAATCGAATGCAGAATTGcatttaaattattacatttgcTCCCATCACATTGAAGATCGTTATTACATAAGCAAAACTGTGcctattattatacaaaaaggtACTATTCCTACCTTATTTAGCATCAACTCGAGTACCAATAATGAGGATTCAATAAGTATATTTGATAAATCACAGCATCTTCAAGAAGTAGATGATAATATGCCTTTAACATATTGTGATATGAATGTCGAGATAGATGAATATCATGATATTACCATCAGATTTACCAATTTGTGTCGAATCTGTGGTGAATCTGCTTTGGATGGAATAGATATTTTTGCAGCCAAGGGTATAGAATTTAaattaagagaaaaaataaatttacatatgcCTATTTCAATTGATATACAAGACTCAATGCCACATAAAGTATGCATCGATTGTTGTAATAAACTGGAAATTGTGCACATGTTAGTTGTTTCATGTTTACGAGCTGATATACGGAtgaaaagatttttaaatattgaaagacAGGCAGAGTATGACAATAAATACAATGCATTAATTCATGAATATTCATTAGAGGTGGCTCAAGAAATATGTGTAGATGATGGTACGAATCCTAattcatttattacaaataagATAGTAAACCCTTCAGAAACAAATTTGAGAGAATTGGGAAATGGTGTATGTTCTGATATACAGAATCATAATTTTCAAAGCATTACAAAGAATATTGTGCCATCAGAATTGAATACTCTGATTCAATCCTGTACAGAAGTTAACAGCAAAGTTAATGAGAATATTGCGgaagaaatattacaaattcaACAAGATAAAATCCAGAATGAAAGTCATAGCATTTTATGCTTGCAGTGCCAAACTTTGTGTGATACACAGGAAATATTTGAGAATCACCAAATATTTTGTAGTAAGAAAGAAGACGTTGCTAAACATTTACCTATATCTAGAATTGCAGAAAATAAAAAGTATAGGAATGATCAAGTTagctgtaaaataaaaaattctcaaaCATACAATAAAAGTTGTGAAAATAAGCAAGTTATTGATAAAGCTGAATTATACGAATCAATTTATTGTACTGTTTGTAATCAAGCATTTAAATGTCAGCAGGATTATGACAATCACAAATGTCTTCATGAAAATCTTATTAATGGATTAAATAAGAAGTGTGGTCATTGTAAAAAAGTTTATCACAATAAGAAAGACTTGTTAAATCATATTGTAGAATCGCACGAGGGGCGATTATTATTTCAGTGCTCTACATGTGATAAGATGTACGAGAAATGGTCTAGCTTGGACATTCATGAAGCTACTCATAGACTAGATAAACCATACCTTTGCGATCTGTGTGGGAAAAGTTTTAAGCATTCTAATAATTTGAGAGGTCATAAAAGAATTCATTTAGATGAATCCATAAAGAAAAGACACATGTGTGAGATCTGTGGCAGTGCATTCAGATCACGGTTTCATTTGCGAGAACATATGAATCAACATGATGGCAACAGACCCTATTCTTGTGAACAGTGTGGGAAAGCCTTTTACAAAAGGATTCAGTTACGGCAACATAAATTATCGCATGGATTTAATAGGCATACATGTCCAATTTGTGGTGCGACATTTAATCGCAGAGGAAACATGAACGCGCACATGAAACGACATAATGCGATTGGAACATATACATGTAGCGTCTGCGCCTACAAATGCAAGTCCATGAGCGAGTTGAAAATACATAGGAAAAAACATAGTGAAGAAGAAATAGTAGATAGTATCAAGAAGAAATGTAATGACAAGGAGATATGGCGGTGTAACGTCTGCAACAAGGTATTCCCAAAGCGCACTGTTCTGATAAATCATGAACGCGTACACGGGGACGATAAATTGTACGAGTGCGAGGAATGCGGTAAAAAATTAGCGAGTAAAAGCTCGTTGATATTTCACAAGAAATCGATACATCTGAGAGAGAGATCGCATATGTGTCATATATGTGGAATTGCATTTGTTTCGAAAGAGGCGCGACTGATTCACGAAAGGATACACACCGGAGAACGTCCTTATGTCTGCAAGGTGTGCAATACGCGATATAGATGTTCCAGTAATCTCAGTCAGCATATGAAGATCCACACAGGTCTTAAGCCGCACAAGTGTCATCATTGTAACAAGAGTTTTACGCGCAAAGGCGCGTTAATTGTCCACGAAAGAATCCACACGGGGATTAAGCCGTATCCTTGCGAGACTTGTGGTAGAAGCTTTTCGCAAAAGAACGATATGTTGAAACACGCAAAGACGCATAAATTAATGCAATGTAACGAGTGCAACGAGCTTTTCAGAAGGAAAAAAGATATGTTGAAGCATATGACAACGCATAAACAAGAGACTTCGGTGATTTCAAATTATGTCGATTCACCGTCACATATTCGAGTTTATGCCAGTACAACTGCCTCTtcggatagagagagagaatga
- Protein Sequence
- MRIVCAALNCKYSSENEDLSNVIFINFPNDDTAKTWAECCGRSDLATKSNAELHLNYYICSHHIEDRYYISKTVPIIIQKGTIPTLFSINSSTNNEDSISIFDKSQHLQEVDDNMPLTYCDMNVEIDEYHDITIRFTNLCRICGESALDGIDIFAAKGIEFKLREKINLHMPISIDIQDSMPHKVCIDCCNKLEIVHMLVVSCLRADIRMKRFLNIERQAEYDNKYNALIHEYSLEVAQEICVDDGTNPNSFITNKIVNPSETNLRELGNGVCSDIQNHNFQSITKNIVPSELNTLIQSCTEVNSKVNENIAEEILQIQQDKIQNESHSILCLQCQTLCDTQEIFENHQIFCSKKEDVAKHLPISRIAENKKYRNDQVSCKIKNSQTYNKSCENKQVIDKAELYESIYCTVCNQAFKCQQDYDNHKCLHENLINGLNKKCGHCKKVYHNKKDLLNHIVESHEGRLLFQCSTCDKMYEKWSSLDIHEATHRLDKPYLCDLCGKSFKHSNNLRGHKRIHLDESIKKRHMCEICGSAFRSRFHLREHMNQHDGNRPYSCEQCGKAFYKRIQLRQHKLSHGFNRHTCPICGATFNRRGNMNAHMKRHNAIGTYTCSVCAYKCKSMSELKIHRKKHSEEEIVDSIKKKCNDKEIWRCNVCNKVFPKRTVLINHERVHGDDKLYECEECGKKLASKSSLIFHKKSIHLRERSHMCHICGIAFVSKEARLIHERIHTGERPYVCKVCNTRYRCSSNLSQHMKIHTGLKPHKCHHCNKSFTRKGALIVHERIHTGIKPYPCETCGRSFSQKNDMLKHAKTHKLMQCNECNELFRRKKDMLKHMTTHKQETSVISNYVDSPSHIRVYASTTASSDRERE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01245381; iTF_00868910; iTF_00869062; iTF_00264469; iTF_00730231; iTF_00730945; iTF_00729515; iTF_01245279; iTF_00265184; iTF_00280109;
- 90% Identity
- -
- 80% Identity
- -