Pmex036504.1
Basic Information
- Insect
- Polyergus mexicanus
- Gene Symbol
- -
- Assembly
- GCA_030449975.1
- Location
- JAUDSZ010000025.1:12296-15553[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.051 8.9 8.3 4.2 2 23 448 470 447 470 0.95 2 14 0.00088 0.15 13.8 0.1 1 23 476 498 476 498 0.98 3 14 1.8e-05 0.0031 19.2 1.9 1 23 504 526 504 526 0.96 4 14 4.3e-05 0.0076 18.0 3.7 1 23 535 557 535 557 0.96 5 14 3.3e-05 0.0058 18.3 1.5 1 23 563 585 563 585 0.98 6 14 1.3e-06 0.00023 22.7 1.2 1 23 590 612 590 612 0.98 7 14 0.011 1.9 10.4 7.3 1 23 618 640 618 640 0.99 8 14 0.00074 0.13 14.1 0.1 2 23 660 681 659 681 0.96 9 14 0.0015 0.27 13.1 0.4 3 23 689 710 687 710 0.96 10 14 0.0029 0.51 12.2 2.1 1 23 716 738 716 738 0.96 11 14 0.0012 0.21 13.4 2.6 1 23 744 766 744 766 0.98 12 14 2.4e-06 0.00042 21.9 3.1 1 23 772 794 772 794 0.98 13 14 1.2e-06 0.00021 22.9 0.8 1 23 800 822 800 822 0.98 14 14 6.7e-05 0.012 17.4 0.7 2 23 828 849 827 849 0.97
Sequence Information
- Coding Sequence
- atgagAATCGTTTGCGCTgcattaaattgtaaatattccTCGGAAAATGAAGATTCGTCAAATgtcattttcattaattttcctAATGATGACACagcCAAAGTATGGGCGGAATGTTGCGGTCGATCGGATTTAGCCACAAAATCGAATGCagaattacatttaaattattacatttgttCCCATCATATTCATCAAGATCATCGCTGTTACATAAGCAAAACTGTGCCTATTTTcatagaaaagaaagaaggtACCATTCCTGCTTTGTTTAGGACCAACTCAAGTATCGATAATGAGGactcgataaatatatttgataaatcgCAGCATCTCCAAGAGGTAGATGATAATATGCTTCTGACATATTGCGATATGAATGTCGGAACAGATGAATATCATCGTGATATCGCTATCAGATTTACCAATTTATGCCGAATCTGTGGTGAATCTGCTTTGGATGGGATAGATATCTTTGCGGCCAAGGGTATAGAGTTTAaattaagagagaaaataaatttgcatatGCCTATTTCAATCGATACGCAAGACTCAATGCCGCACAAAATATGCATTGATTGTTACAACAAACTGGAAATTGTGCACTCTTTAGCTGTTTCGTGTTTACGTACCGATTTGCGGATTAAaagatttctaaatattgaaggacaaTCGGAATATGAAAATAAGTACAATACATTAATTGAGGAATGCTCATTAGAGACGGCTCAAGAGATGTGCGCAGATGAGAGTGCGCATACTTATTCATTTCTTACAAATAAGATAGTAAATTCTTCAGAAACAAGTTTGAGAGAATTAGAAAATGATGCACGTTCTGAAATACAGAATTATAACTTTCGTAGCATTGCAAAGAGCATTGCGCCATCAGGATTAAATACTCTGATACAAACCTGTACAGACGTTAACAGCAAAGCTAATAAGATTATCGTAGATGAAATATCACAAATTCGACAAGATAAAACTCAGAATGGAAATCGTAGCATTTTTTGCTTGCGGTGCCAAACTTTATGCGACACGCAGGAAATATTTGAGAGtcacaaaatattttgtagcaaAAAAGAGGATATTCCTAAACATATAACTATAGATAGAATTgcagaaaatgaaaatgaaaaatataggAATGAGCGGGTtagctttaaaataaaaaattctcagACATTCGATAAAGAATTCGATAAAGAAGGCAAACAAATTACTGATAAGACTAAAATATATGAGTCAATTTATTGTATCGTTTGCAATAAAGCATTTAAATGTCAGCAGGATTACGACAATCACAAGTATCTTCATGAAAATCTTATCACTGAAATGAATAAAAGGTGCGGTCATTGTAaagaattttatcataatagaAAAGACTTGTTAAATCATATTATGGAATCGCATGAGGGGCGATTATTATTTCAGTGTTCTACATGCGATAAGATGTACGAAAAATGGCCTAGCTTAGACATTCACGAAGCTACTCACAGAATAGATAAGCCGTATCTTTGCGATCTGTGTGGAAAAGGTTTTAAGCATTCCAATAATTTGAGAGGTCATAAAAGAATTCATTTGGATGAATCTATAAAGAAAAGACACATGTGTGAGGCCTGTGGTAAAGCATTCAGATCACGATTTCATTTGCGAGAACATATGAATCAACACGATGACAACAGGCCCTATTCTTGTGAACAGTGCGGGAAAGCCTTCTACAAAAGAATTCAATTACGCCAGCACAAATTATCGCATGGATCCAATAAGCATGTATGTCCTATTTGTGATGCGACATTTAATCGCAGAGGAAACATGAATACGCATATGAAACGACATAATGCGATTGGAGCTTATACGTGTAGTGTCTGCACCTGCAAGTGCAAGTCTATGAGCGAATTGAAGATACATAGGAGAAAACATACCGAGGAAGAAATAGTAGATAGCATCAAAAAGAAATGTAATGACAAGGAGATATGGCGGTGTAATATTTGCAACAAGGTATTCCCAAAGCGCGCTATTTTGATAAATCACGAACGCGTACACGGAAACGATAAATTATACGGGTGCGACGAATGCGGTAAAAAATTAGCGAGTAAAGGCTCATTGATGTATCACAAGAAATCGATGCATCTGAGAGAGAGACCGCACATGTGTCACTATTGCGGAAATTCGTTTGTTTCGAAAGAGGCGCGACTGATCCACGAAAGGATACACACAGGAGAACGTCCATATGTCTGCGGCATGTGCAATATGCGATATAGATGTTCCAGTAATCTCAGCCAGCATATGAAGATCCACACAGGTCTCAAGCCGCACAAGTGCCATTATTGTAACAAAGGTTTTACGCGCAAAGGTGCGCTAATTGTCCACGAGAGGATCCACACAGGCGTTAAACCGTATCCTTGCGAGACTTGCGGCAAAAGCTTTTCGCAAAAGAATGATATGTTGAAGCACGCCAAGACGCACAATGGCAAATTAATGCAGTGTAGCCAATGCAACGAGATGTTTAAACGGAAAAAAGATATGGTTAAGCATATCGCAGTGCATAAACAAGATATTTCGGTGATTTCAAACAATGTCAATTCGCCGCCGTCATACGTTCCTCGAACTTGTGCCGGTACAATTGCCTCTTCggacagagaaagagaaattgaataa
- Protein Sequence
- MRIVCAALNCKYSSENEDSSNVIFINFPNDDTAKVWAECCGRSDLATKSNAELHLNYYICSHHIHQDHRCYISKTVPIFIEKKEGTIPALFRTNSSIDNEDSINIFDKSQHLQEVDDNMLLTYCDMNVGTDEYHRDIAIRFTNLCRICGESALDGIDIFAAKGIEFKLREKINLHMPISIDTQDSMPHKICIDCYNKLEIVHSLAVSCLRTDLRIKRFLNIEGQSEYENKYNTLIEECSLETAQEMCADESAHTYSFLTNKIVNSSETSLRELENDARSEIQNYNFRSIAKSIAPSGLNTLIQTCTDVNSKANKIIVDEISQIRQDKTQNGNRSIFCLRCQTLCDTQEIFESHKIFCSKKEDIPKHITIDRIAENENEKYRNERVSFKIKNSQTFDKEFDKEGKQITDKTKIYESIYCIVCNKAFKCQQDYDNHKYLHENLITEMNKRCGHCKEFYHNRKDLLNHIMESHEGRLLFQCSTCDKMYEKWPSLDIHEATHRIDKPYLCDLCGKGFKHSNNLRGHKRIHLDESIKKRHMCEACGKAFRSRFHLREHMNQHDDNRPYSCEQCGKAFYKRIQLRQHKLSHGSNKHVCPICDATFNRRGNMNTHMKRHNAIGAYTCSVCTCKCKSMSELKIHRRKHTEEEIVDSIKKKCNDKEIWRCNICNKVFPKRAILINHERVHGNDKLYGCDECGKKLASKGSLMYHKKSMHLRERPHMCHYCGNSFVSKEARLIHERIHTGERPYVCGMCNMRYRCSSNLSQHMKIHTGLKPHKCHYCNKGFTRKGALIVHERIHTGVKPYPCETCGKSFSQKNDMLKHAKTHNGKLMQCSQCNEMFKRKKDMVKHIAVHKQDISVISNNVNSPPSYVPRTCAGTIASSDREREIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01077664;
- 90% Identity
- iTF_00730945;
- 80% Identity
- -