Fexs009210.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Formica exsecta
Gene Symbol
-
Assembly
GCA_003651465.1
Location
NW:1147738-1154453[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 1.4e+02 2.6 2.3 2 23 410 431 409 431 0.85
2 15 0.0065 0.44 10.5 3.2 2 23 441 463 440 463 0.95
3 15 6.6e-05 0.0045 16.7 0.3 1 23 469 491 469 491 0.98
4 15 3.7e-06 0.00025 20.7 2.6 1 23 497 519 497 519 0.96
5 15 2.3e-05 0.0016 18.2 3.2 1 23 528 550 528 550 0.96
6 15 2.1e-05 0.0014 18.3 1.5 1 23 556 578 556 578 0.98
7 15 8.3e-07 5.6e-05 22.7 1.2 1 23 583 605 583 605 0.98
8 15 0.0081 0.55 10.2 4.7 1 23 611 633 611 633 0.99
9 15 5.4e-05 0.0037 17.0 0.2 2 23 653 674 652 674 0.97
10 15 2.2e-05 0.0015 18.2 1.2 1 23 680 703 680 703 0.97
11 15 0.0018 0.12 12.2 2.1 1 23 709 731 709 731 0.96
12 15 0.0004 0.027 14.3 3.4 1 23 737 759 737 759 0.98
13 15 1.5e-06 0.0001 21.9 3.1 1 23 765 787 765 787 0.98
14 15 7.4e-07 5e-05 22.9 0.8 1 23 793 815 793 815 0.98
15 15 0.00019 0.013 15.3 0.5 2 23 821 842 820 842 0.97

Sequence Information

Coding Sequence
atgaGAATCGTTTGCGCTgcattaaattgtaaatattcctCGGAAAATGAAGATTCGTCAAatgttattttcattaattttcctAATGATGACACagccAAAGTATGGGCGGAATGTTGCGGTCGATCGGATTTAGCCACAAAATCGAATGcagaattacatttaaattattacatttgttcCCATCATATTGAAGATCGCTGTTACATAAGCAAAACTGTGCCTATTaccatagaaaaaaaagaaggtaCTATTCCTGCCTTATTTAGGACCAACACAAGTACCGATAATGAggattcaataaatatatttgataaatcacAGCATCTCCAAGAGGTAGATGACAATATGCCTCTGACATATTGCAATATGAATGTCGAGACAGATGAATATCATGATATCACTATCAGATTTACCAATTTATGCCGAATCTGTGGTGAATCCGCTTTAGATGGGATAGATATCTTTGCAGCCAAGGGTATAGAGtttaaattaagagaaaaaataaatttgcatatgcCTATTTCAATTGATATAGAAGACTCAATGCCACACAAAATGTGCATTGATTGTTACAACAAATTGGAAATTGCACACTCTTTAGTTGTTTCATGTTTACGTACTGATTTGCGGATGAAAAGATTCCTAAATATTGAAAGACAGTCAGAATATGAAAATAAGTACAATACATTAATTGAGGAATGTTCATTAGAGATGGCTCAAGAGATGTGTACAGACGAGAGTACGCAtacttattcatttattacaaataagaTAGTAAATCCTTCAGAAACAAGTTTGAGAGAATTAGAAAATGGTGTACGTTCTGAAATACAGAATCATAACTTTCATAGCATTGCAAAGAACATTGTGCCATCAGAATTAAATACTCTAATCCAAACTTGTACAGAAGTTAACAGCAAGGCTAATAAGACTATCGTGGAAGAAATATCACAAATTCAACAAGATAAAATCCAAGATGAAAATCATAGCATTTTTTGCTTGCAGTGCCAAACTTTGTGCGATACACAGGAAATATTTgagaatcataaaatattttgtagtaAAAAAGAGGATATTCCTAAACATATAACTATACCTAGAACTGCAGAAAATGAAAAGTATAGGAATGAGCAGGTTAgctttaaagtaaaaaattctcaaacattcaataaagaatatgaaaaCAAACAAATTACTGATAAAGCTAAAATATATGAGTCAATTTATTGTACTGTTTGCAATCAAGCATTTAAATGTCAGCAGGATTATGACAATCACAAATATCTTCATGAAAATCTTATCACTGAAATGAATAAAAGGTGTGGTCATTGTAAAGAAGTTTATCATAATAGAAAAGACTTGTTAAATCATATCATGGAATCGCATGAGGGGCGATTATTATTTCAGTGCTCTACATGCGATAAGATGTACGAAAAATGGTCTAGCTTAGACATTCATGAAGCTACTCACAGAATAGATAAGCCATATCTTTGCGATCTATGTGGAAAAAGTTTTAAGCATTCTAATAATTTGAGAGGTCATAAAAGAATTCATTTGGATGAATCTATAAAGAAAAGACACATATGTGAGGCCTGTGGTAAAGCATTCAGATCACGATTTCATTTGCGAGAACATATGAATCAACATGATGACAACAGGCCCTATTCTTGTGAACAGTGTGGGAAAGCCTTCTACAAAAGAATTCAATTACGCCAACACAAATTATCGCATGGATCCAATAAGCATGTATGTCCTATTTGTGATGCGACATTTAATCGCAGAGGAAACATGAATACGCATATGAAACGACATAATGCGATTGGAGTTTATACATGTAGTGTCTGCACCTACAAGTGCCAGTCTATGAGCGAATTAAAGATACATAGGAAAAAACATACCGAGGAAGAAATAGTAGATAGCatcaaaaagaaatgtaatgaCAAGGAGATATGGCGGTGTAATATTTGCAACAAGGTATTCCCAAAGCGCACTGTTTTGATCAATCACGAACGGGTACACGGaaacgataaattatacaGGTGCGACGAATGCGGTAAAAAATTAGCGAGTAAAAGCTCGTTGATGTATCACAAGAAATCGATGCATCTGAGAGAGAGACCGCACATGTGTCACTATTGCGGAAATTCGTTTGTTTCGAAAGAGGCGCGACTGATCCACGAAAGGATACACACAGGAGAACGTCCGTATGTCTGCAAGGTGTGCAATATGCGATATAGATGTTCCAGTAATCTCAGCCAACATATGAAGATCCACACAGGTCTCAAGCCGCACAAGTGCCATTATTGTAACAAAGGTTTTACGCGCAAAGGTGCGCTAATTGTCCACGAGAGGATTCACACGGGCGTTAAACCGTATCCTTGCGAGACTTGTGGTAAAAGCTTTTCGCAAAAGAATGATATGTTGAAGCACGCCAAGACGCACAATGGCAAATTAATGCAATGTAGCCAATGCAACGAGATCTTTAAacggaaaaaagatatattaaagcaTATCGCAGTGCATAAACAAGATATTTCGGTGATTTCAAACAATGTCAATTCGCCGTCATACGTTTCTCGAGCTTATGCCCGTACAATTGCCTCTTcggacagagaaagagaaattgaataa
Protein Sequence
MRIVCAALNCKYSSENEDSSNVIFINFPNDDTAKVWAECCGRSDLATKSNAELHLNYYICSHHIEDRCYISKTVPITIEKKEGTIPALFRTNTSTDNEDSINIFDKSQHLQEVDDNMPLTYCNMNVETDEYHDITIRFTNLCRICGESALDGIDIFAAKGIEFKLREKINLHMPISIDIEDSMPHKMCIDCYNKLEIAHSLVVSCLRTDLRMKRFLNIERQSEYENKYNTLIEECSLEMAQEMCTDESTHTYSFITNKIVNPSETSLRELENGVRSEIQNHNFHSIAKNIVPSELNTLIQTCTEVNSKANKTIVEEISQIQQDKIQDENHSIFCLQCQTLCDTQEIFENHKIFCSKKEDIPKHITIPRTAENEKYRNEQVSFKVKNSQTFNKEYENKQITDKAKIYESIYCTVCNQAFKCQQDYDNHKYLHENLITEMNKRCGHCKEVYHNRKDLLNHIMESHEGRLLFQCSTCDKMYEKWSSLDIHEATHRIDKPYLCDLCGKSFKHSNNLRGHKRIHLDESIKKRHICEACGKAFRSRFHLREHMNQHDDNRPYSCEQCGKAFYKRIQLRQHKLSHGSNKHVCPICDATFNRRGNMNTHMKRHNAIGVYTCSVCTYKCQSMSELKIHRKKHTEEEIVDSIKKKCNDKEIWRCNICNKVFPKRTVLINHERVHGNDKLYRCDECGKKLASKSSLMYHKKSMHLRERPHMCHYCGNSFVSKEARLIHERIHTGERPYVCKVCNMRYRCSSNLSQHMKIHTGLKPHKCHYCNKGFTRKGALIVHERIHTGVKPYPCETCGKSFSQKNDMLKHAKTHNGKLMQCSQCNEIFKRKKDILKHIAVHKQDISVISNNVNSPSYVSRAYARTIASSDREREIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01077664;
90% Identity
iTF_00730945;
80% Identity
-