Chis000225.1
Basic Information
- Insect
- Cataglyphis hispanica
- Gene Symbol
- -
- Assembly
- GCA_004195275.1
- Location
- SGAY01000411.1:26654-29862[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.47 61 5.1 2.8 2 23 408 429 407 429 0.86 2 15 0.16 20 6.6 1.5 2 23 439 461 438 461 0.93 3 15 9.4e-05 0.012 16.7 0.3 1 23 467 489 467 489 0.98 4 15 5.3e-06 0.00068 20.7 2.6 1 23 495 517 495 517 0.96 5 15 9.8e-06 0.0013 19.8 4.8 1 23 526 548 526 548 0.97 6 15 2.9e-05 0.0038 18.3 1.5 1 23 554 576 554 576 0.98 7 15 2.1e-06 0.00027 21.9 1.2 1 23 581 603 581 603 0.98 8 15 0.0019 0.25 12.6 5.1 1 23 609 631 609 631 0.99 9 15 0.00011 0.014 16.6 0.2 2 23 651 672 650 672 0.97 10 15 0.00043 0.055 14.7 0.6 3 23 680 701 678 701 0.96 11 15 0.0026 0.33 12.2 2.1 1 23 707 729 707 729 0.96 12 15 0.001 0.13 13.5 3.4 1 23 735 757 735 757 0.98 13 15 3.9e-06 0.0005 21.1 3.5 1 23 763 785 763 785 0.98 14 15 1.3e-06 0.00017 22.6 1.1 1 23 791 813 791 813 0.98 15 15 8.9e-05 0.011 16.8 0.9 2 23 819 840 818 840 0.97
Sequence Information
- Coding Sequence
- atgagAATCGTTTGCGCtgcattaaattgtaaatattcctCGGAAAATGAAGATTCATCAAAtgtcattttcattaattttcctaACGATGACACagcCAAAATATGGGCGGAATGTTGCGGTAGATCGGATTTGGCCACAAAATCGAATGcagaattacatttaaattattacatttgttcCCATCATATTGAAGATCGCTGTTACATAAACAAAACTATGCCTAttacgatagaaaaaaaagaaggtacTATTTCTGCCTTATTTAGGACCAACTCAAGTACCGATAATgagaattcaataaatatatttgataaatcacAGCATCTCCAAGAAGTAGATGATAATATGCCTCTGACATATTGTGATATGAATGTCGAGACAGATGAATATCATGACATCACTATcagatttacaaatttatgccGAATCTGTGGTGAATCTGCTTTGGATGGAATAGATATCTTTGCAGCCAAGGGTATAGAGtttaaattaagagaaaaaataaatttgcatatgcctatttcaattaatatagaagATTCAATGCCACATAAAGTGTGTGTTGATTGTTACAACAAATTGGAAATTGCACATTCTTTAGTTGTTTCATGTTTACGTACTGATTTGCGGATGAAAAGATTCCTAAATATAGAAAGACagTCAGAATATGAGAATAAGTACAATACATTAATTGAGGAATGTTCATTAGAGATGACTCAAGAGGTGTGTGCAGATGAGAGTACACAtacttattcatttattacaaataagataataaatcctTCAGAAACAAATTTGAGGGAATTAGGAAATGATGTACGTTCTGAAATACAGAATCATAACTTTCAGAGCAGTGCAAAGAGCATTGTGCCATCAGAATTAAATACTCTGATCCAAACCTGTACAGAAGTTAACAGCAAGACTAATAAGATTATCACGGAAGAAATATCACAAATTCAACAAGATAAAATCCAGGATAAAAATCATAGCATTTTTTGCTTGCAGTGCCAAACTTTGTGCGATacacaagaaatatttgaaaatcataaaatattttgtaataagaaagagaatgtTCTTAAACATATAACTAGAACTgtagaaaatgaaaagtatAGGAATGAGCAGGTtagctttaaaataaaaaattctcaaacattcaataaagaatatgaaaaCAAGCAAATTACTGATAAAGCTAAAATATATGAGTCAATTTATTGTACTGTTTgcaataaagtatttaaatgtCAGCAGGATTATGACAATCACAAGTATCTTCATGAAAATCTTATCACTGAAATGAGTAAAAGGTGTGGTCATTGTAAAGAAGTTTATCTTAATAGAAAAGACTTGTTAAATCATATCACGGAATCGCATGAGGggcgattattatttcaatgctCTACATGTGATAAGATGTACGAGAAATGGTCCAGTTTAGATATTCATGAAGCTACTCACAAAATAGATAAGCCATATCTTTGCGATCTGTGTGGAAAAAGTTTTAAGCATTCCAATAATTTGAGAGGTCATAAAAGAATTCATTTGGATGAATCTATAAAGAAAAGACACATGTGTGAGACTTGTGGCAAAGCATTCAGATCACGATTTCATTTGCGAGAACATATGAATCAACATAATGGCAACAGACCCTATTCTTGTGAACAGTGTGGGAAAGCCTTCTACAAAAGAATTCAATTACGCCAACACAAATTATCACATGGATCCAATAAGCATGTATGTCCTGTTTGTGATGCGACATTTAATCGCAGAGGAAACATGAATACACATATGAAACGACATAATGCAGTTGGAGCATATACATGTAGTGTCTGCACTTACAAGTGCAAATCTATGAGCGAATTGAAGATACATAGGAAAAAACATACcgaagaagaaatagtagaaagcataaaaaaaaaatgtaatgacaAGGAGATATGGCAGTGTAATGTCTGCAACAAGGTATTTCCAAAGCGCACCGTTCTGATAAATCACGAACGCGTACACGGAAACGATAAATTGTACGGTTGCGACGAATGCGGTAAGAAATTAGCGAGTAAAAGCTCATTAATGTATCACAAGAAATCGATGCATCTAAGAGAGAGACCGCACATGTGTCACTATTGCGGAAATTCGTTTGTTTCGAAAGAAGCGCGACTGATCCACGAAAGGATACACACAGGAGAACGTCCGTACATCTGCAAGGTTTGCAATATGCGATATAGATGTTCCAGTAATCTCAGCCAACATATGAAGATCCACACAGGTCTCAAGCCGCATAAGTGTCATTATTGTAACAAAGATTTCACGCGCAAAGGTGCGCTAATTGTCCACGAGAGGATCCACACGGGCGTTAAACCATATCCTTGCGAGACTTGTGATAAAAGCTTTTCGCAAAAGAATGATATGTTGAAGCATGTCAAGACGCACAATGGCAAATTAATGCAATGTAGCCAATGCAACGAGATTTTTAAACggaaaaaagatatgttaaaGCATATCGCGATGCATAAAccaaatatttcaatgatttCAAACAATGTCAATTTGTCATCATTGATTCCTCGATCTTATGCCAGTACAATTGCCTCTTcggatagagaaagagaaattgaataa
- Protein Sequence
- MRIVCAALNCKYSSENEDSSNVIFINFPNDDTAKIWAECCGRSDLATKSNAELHLNYYICSHHIEDRCYINKTMPITIEKKEGTISALFRTNSSTDNENSINIFDKSQHLQEVDDNMPLTYCDMNVETDEYHDITIRFTNLCRICGESALDGIDIFAAKGIEFKLREKINLHMPISINIEDSMPHKVCVDCYNKLEIAHSLVVSCLRTDLRMKRFLNIERQSEYENKYNTLIEECSLEMTQEVCADESTHTYSFITNKIINPSETNLRELGNDVRSEIQNHNFQSSAKSIVPSELNTLIQTCTEVNSKTNKIITEEISQIQQDKIQDKNHSIFCLQCQTLCDTQEIFENHKIFCNKKENVLKHITRTVENEKYRNEQVSFKIKNSQTFNKEYENKQITDKAKIYESIYCTVCNKVFKCQQDYDNHKYLHENLITEMSKRCGHCKEVYLNRKDLLNHITESHEGRLLFQCSTCDKMYEKWSSLDIHEATHKIDKPYLCDLCGKSFKHSNNLRGHKRIHLDESIKKRHMCETCGKAFRSRFHLREHMNQHNGNRPYSCEQCGKAFYKRIQLRQHKLSHGSNKHVCPVCDATFNRRGNMNTHMKRHNAVGAYTCSVCTYKCKSMSELKIHRKKHTEEEIVESIKKKCNDKEIWQCNVCNKVFPKRTVLINHERVHGNDKLYGCDECGKKLASKSSLMYHKKSMHLRERPHMCHYCGNSFVSKEARLIHERIHTGERPYICKVCNMRYRCSSNLSQHMKIHTGLKPHKCHYCNKDFTRKGALIVHERIHTGVKPYPCETCDKSFSQKNDMLKHVKTHNGKLMQCSQCNEIFKRKKDMLKHIAMHKPNISMISNNVNLSSLIPRSYASTIASSDREREIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01077664;
- 90% Identity
- iTF_00730945;
- 80% Identity
- -