Npan022159.1
Basic Information
- Insect
- Nomada panzeri
- Gene Symbol
- Sry-delta
- Assembly
- GCA_951802685.1
- Location
- OX637843.1:11557450-11558713[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.4 3.2e+03 -1.6 0.1 35 44 16 25 14 26 0.84 2 3 1e-09 1.4e-06 28.4 0.1 4 38 29 62 28 67 0.90 3 3 4.2 5.7e+03 -2.4 0.0 30 38 90 98 90 103 0.83
Sequence Information
- Coding Sequence
- ATGGGGCGTACCCTTGGCAGACGGTTTATCAAAGGCGGAAGACCGAGGTATTTCAGAAGAGGTTACGAGAAACAAGAAATCGAGCACATAAAATTGGCCGTCGAAGCAGTGGCCAATGGACTATCGTTGAGGAAAGCAGCCAAAATGTTCTGCATGTCCAAGTCTGTTCTTCACCGTTACAGCAAATCGGAGCAGCGTTCGGCGGGCTACCTGAACTGCCAGAGAGTCACCTACCCGTGCAAGAACTGTGGCAAAGTGTACAATTACTACTCCAGCTTGGCCAGGCATTTGAAGCACGAGTGCGGCGTGGAACCAAAGTTCCACTGTCCCCTCTGCCCTTACAGAACGAAGCACAAGTCCAGCTTGAACACTCACCTCAACGGCAGGCATATGAAGCTCCTGAGCGAATTCTACGCGATGccaaacggaaacaagctgtCCCCATCCATGGATACCGGCAATTAA
- Protein Sequence
- MGRTLGRRFIKGGRPRYFRRGYEKQEIEHIKLAVEAVANGLSLRKAAKMFCMSKSVLHRYSKSEQRSAGYLNCQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYAMPNGNKLSPSMDTGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00142117;
- 90% Identity
- iTF_01068897; iTF_01066567; iTF_01068211; iTF_01069975; iTF_01068602; iTF_01069275; iTF_01066172; iTF_01065870; iTF_01065486;
- 80% Identity
- iTF_01068602;