Nhir018560.1
Basic Information
- Insect
- Nomada hirtipes
- Gene Symbol
- Sry-delta
- Assembly
- GCA_951802735.1
- Location
- OX637928.1:13037491-13038722[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.1 2.8e+03 -1.5 0.1 35 44 8 17 6 18 0.84 2 3 1.3e-09 1.2e-06 28.5 0.1 4 38 21 54 20 59 0.90 3 3 5.6 5e+03 -2.3 0.0 30 38 82 90 82 95 0.83
Sequence Information
- Coding Sequence
- ATGATTTTCTGCGGAAGACCGAGGTATTTCAGAAGAGGTTACGAGAAACAAGAAATCGAGCACATAAAATTGGCCGTCGAAGCAGTGGCCAATGGACTATCGTTGAGGAAAGCAGCCAAAATGTTCTGCATGTCCAAGTCTGTTCTTCACCGTTACAGCAAATCGGAGCAGCGTTCGGCGGGCTACCTGAACTGCCAGAGAGTCACCTACCCGTGCAAGAACTGTGGCAAAGTGTACAATTACTACTCCAGCTTGGCCAGGCATTTGAAGCACGAGTGCGGCGTGGAACCAAAGTTCCACTGTCCCCTCTGCCCTTACAGAACGAAGCACAAGTCCAGCTTGAACACTCACCTCAACGGCAGGCATATGAAGCTCCTGAGCGAATTCTACGCGATGCCGAACGGAAACAAGCTGTCCCCATCCATGGATACCGGCAATTAA
- Protein Sequence
- MIFCGRPRYFRRGYEKQEIEHIKLAVEAVANGLSLRKAAKMFCMSKSVLHRYSKSEQRSAGYLNCQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYAMPNGNKLSPSMDTGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00142117;
- 90% Identity
- iTF_01069578;
- 80% Identity
- iTF_01068602;