Nfer015235.1
Basic Information
- Insect
- Nomada ferruginata
- Gene Symbol
- Sry-delta
- Assembly
- GCA_963583965.1
- Location
- OY757223.1:709652-710886[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.8 3e+03 -1.5 0.1 35 44 13 22 11 23 0.84 2 3 1.2e-09 1.3e-06 28.5 0.1 4 38 26 59 25 64 0.90 3 3 5 5.4e+03 -2.3 0.0 30 38 87 95 87 100 0.83
Sequence Information
- Coding Sequence
- ATGATTCTCTGGCGGTTTATCAAAGGCGGAAGACCGAGGTATTTCAGAAGAGGTTACGAGAAACAAGAAATCGAGCACATAAAATTGGCCGTCGAAGCAGTGGCCAATGGACTATCGTTGAGGAAAGCTGCCAAAATGTTCTGCATGTCCAAGTCTGTTCTTCACCGTTACAGCAAATCGGAGCAGCGTTCGGCGGGCTACCTGAACTGCCAGAGAGTCACCTACCCGTGCAAGAACTGTGGCAAAGTGTACAATTACTACTCCAGCTTGGCCAGGCATTTGAAGCACGAGTGCGGCGTGGAACCAAAGTTCCACTGTCCCCTCTGCCCTTACAGAACGAAGCACAAGTCCAGCTTGAACACTCACCTCAACGGCAGGCATATGAAGCTCCTGAGCGAATTCTACGCGATGCCAAACGGAAACAAGCTGTCCCCATCCATGGATACCGGCAATTAA
- Protein Sequence
- MILWRFIKGGRPRYFRRGYEKQEIEHIKLAVEAVANGLSLRKAAKMFCMSKSVLHRYSKSEQRSAGYLNCQRVTYPCKNCGKVYNYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYAMPNGNKLSPSMDTGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00142117;
- 90% Identity
- iTF_01069578;
- 80% Identity
- iTF_01068602;